CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH23958
KRH39841
KRH65920
KRH75713

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63200.1	KRH23958	AT4G25200.1	21798944
AT5G63200.1	KRH39841	AT4G25200.1	21798944
AT5G63200.1	KRH65920	AT5G02150.1	21798944
AT5G63200.1	KRH75713	AT5G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54254	Soybean	cytosol, nucleus	92.55	92.69
VIT_17s0000g09890.t01	Wine grape	cytosol	71.89	70.36
PGSC0003DMT400069629	Potato	cytosol	64.44	63.17
AT5G63200.1	Thale cress	cytosol	63.04	62.56
Solyc06g071850.2.1	Tomato	nucleus	63.51	62.25
GSMUA_Achr8P09010_001	Banana	cytosol	58.85	60.83
Bra035851.1-P	Field mustard	cytosol	62.11	60.42
CDY48133	Canola	cytosol	61.34	59.94
CDY16731	Canola	cytosol	61.34	59.76
Os01t0906600-01	Rice	cytosol	55.12	59.27
EES04067	Sorghum	cytosol	54.81	57.68
Zm00001d042450_P002	Maize	cytosol	54.35	57.38
Bra007638.1-P	Field mustard	cytosol	4.97	56.14
TraesCS3D01G383400.1	Wheat	cytosol	52.8	55.83
TraesCS3B01G422600.2	Wheat	cytosol	52.64	55.03
TraesCS3A01G390800.2	Wheat	cytosol	52.48	54.87
HORVU3Hr1G088460.2	Barley	cytosol	52.48	54.78
CDY08125	Canola	cytosol	5.43	54.69
HORVU3Hr1G088480.1	Barley	mitochondrion	52.8	52.31

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100820184	MapMan:35.2	EMBL:ACUP02002706	EnsemblPlantsGene:GLYMA_04G191600	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:K7KL29
ProteinID:KRH63688.1	ProteinID:KRH63689.1	EnsemblPlants:KRH63690	ProteinID:KRH63690	ProteinID:KRH63690.1	PFAM:PF13181
PFAM:PF13424	PFAM:PF14559	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR45523	SMART:SM00028
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002339AB4	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:46244011..46249989

Molecular Weight (calculated)

70222.7 Da

IEP (calculated)

5.928

GRAVY (calculated)

-0.207

Length

644 amino acids

Sequence
(BLAST)

001: MAEKLGAAEE SSNSKAFHHT ATKLVVLADL NVDPPEAEAE EVDSSLVPPP PITILGNDEN SQDKSSLSKD TDSIEGESKK LNKLSKSRSR KTDSSLDCVA
101: DVDGDQHVQG PPSSREEKVS SVKTGLVHVA RKMPKNAHAH FILGLMYQRL SQPQKAVLAY EKAEEILLRP EAEIDRPELL SLVQIHHAQC LILESSSENS
201: SDKELEPHEL EEILFKLKQS VRSDIRQTAV WNTLGFILLK TGRMQSAISV LSSLLSIAPE NYDCLGNLGI AYLQIGNLEL SAKCFQELIL KDQNHPAALV
301: NYAALLLCKY ASVVAGPGAI AAEGALTDQI MAANVAKECL LAAVKADSKS AHVWANLAYA FSISGDHRSS SKCLEKAAKL EPNCMSTRYA VAIHRIKEAE
401: RSQDPTELLS CAGNEMASII RDSDSSLVEI PIVWSGLAMV HKAQHEIAAA YESEQNGLRE VEERAVCSLK QAIAEDPNDA VQWHQLGVHS LCARQFKTSQ
501: KYLKAAVACD KDCSYAWSNL GVSLQLSEEP SQAEEVYKQA LSLATTQQAH AILSNLGILY RHQKQYQRAK AMFTKSLELQ PGYALAFNNL GLVFVAEGLL
601: EEAKYCFDKA LQSDSLLDAA KSNLIKVVAM SKLCKGLSSC GLKE

Best Arabidopsis Sequence Match ( AT5G63200.1 )
(BLAST)

001: MDRPETIAVK CEPMTVDSPS RPLKLVVLAD LNFNPPETDD LDSSIPIPTP PPITRLSNEE SHQEGGILTC KEVEPGEVEA KKISKVGKCR SRSKIESSSD
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-containing protein [Source:UniProtKB/TrEMBL;Acc:Q67YJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.