Factsheet for Solyc06g071850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g078700.2.1
Solyc09g011030.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63200.1	Solyc08g078700.2.1	AT4G25200.1	21798944
AT5G63200.1	Solyc09g011030.2.1	AT5G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069629	Potato	cytosol	96.65	96.65
VIT_17s0000g09890.t01	Wine grape	cytosol	66.21	66.11
KRH63690	Soybean	cytosol	62.25	63.51
KRH54254	Soybean	cytosol, nucleus	61.95	63.3
AT5G63200.1	Thale cress	cytosol	59.21	59.94
Bra035851.1-P	Field mustard	cytosol	59.36	58.91
CDY16731	Canola	cytosol	59.21	58.85
CDY48133	Canola	cytosol	58.9	58.73
GSMUA_Achr8P09010_001	Banana	cytosol	55.1	58.11
Bra007638.1-P	Field mustard	cytosol	5.02	57.89
Os01t0906600-01	Rice	cytosol	52.05	57.1
TraesCS3D01G383400.1	Wheat	cytosol	51.45	55.5
Zm00001d042450_P002	Maize	cytosol	51.45	55.41
EES04067	Sorghum	cytosol	51.6	55.39
TraesCS3A01G390800.2	Wheat	cytosol	51.29	54.71
TraesCS3B01G422600.2	Wheat	cytosol	51.14	54.55
HORVU3Hr1G088460.2	Barley	cytosol	51.14	54.46
CDY08125	Canola	cytosol	5.18	53.12
HORVU3Hr1G088480.1	Barley	mitochondrion	51.29	51.85

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:K4C8Q7	PFAM:PF07719	PFAM:PF13181
PFAM:PF13424	PFAM:PF14559	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR45523	SMART:SM00028
SUPFAM:SSF48452	EnsemblPlantsGene:Solyc06g071850.2	EnsemblPlants:Solyc06g071850.2.1	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_2
InterPro:TPR_repeat	UniParc:UPI000276556D	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:44262850..44270266

Molecular Weight (calculated)

71943.9 Da

IEP (calculated)

6.048

GRAVY (calculated)

-0.236

Length

657 amino acids

Sequence
(BLAST)

001: MSEIPASNSV KIPSMKSESL VVDRNSGSVR LQPPLQYQPS KIVLADLNVD PPDSDGNDSV PVAAVSPICL SRVIADEICQ DKLKKDIEIA ETEGKQLKKL
101: GKCRSRMGKL ECPPDCNGAD AEADHNVHGV PSSREEKVSS LKTGLIHVAR KMPKNAHAHF VLGLMYQRMG QPQKAILAYE KSEEILVRSE EAIDRPELLS
201: LVQVHHAQCI LLGTLEDCSS DEELDPEELE NILAKLKEVV KSDVRQASIW NALGIILLRS GRLQSAISVF STLLDISPDN LDCLSNLGIA CLQSGNLELS
301: EKCFQDLLIK DQNHPTALIN YAALILYKYG SLVAGAGANT LYGTSADQVT AANVAKECLL AALKADSKAA HIWTNLANAY YLMGDHRSSA KCLEKAGKID
401: PNCLATRYAV GVHRIRDAER SQNPNEQLSW AGIEMASILR EGDSTSIEPP VAWAGLAMVH RAQHEIVAGF EVEHNELVEV KEHAIYSLKQ AIAEDPADAV
501: QWHQLGLHSL CTQQFKTSQT YLKAAVARRK DCTYAWSNLG ISLQLSEESS QAESVYKQAL SLATPKQAHT IFSNLGNLYR QLKQYECAKA MFNKSLELQP
601: GYAPALNNLG LVYVAEGKWN EAKDSFDKAI QADPLLDAAK SNMIKASNML NMYTSMS

Best Arabidopsis Sequence Match ( AT5G63200.1 )
(BLAST)

001: MDRPETIAVK CEPMTVDSPS RPLKLVVLAD LNFNPPETDD LDSSIPIPTP PPITRLSNEE SHQEGGILTC KEVEPGEVEA KKISKVGKCR SRSKIESSSD
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-containing protein [Source:UniProtKB/TrEMBL;Acc:Q67YJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.