CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH23958
KRH39841
KRH65920
KRH75713

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63200.1	KRH23958	AT4G25200.1	21798944
AT5G63200.1	KRH39841	AT4G25200.1	21798944
AT5G63200.1	KRH65920	AT5G02150.1	21798944
AT5G63200.1	KRH75713	AT5G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63690	Soybean	cytosol	92.69	92.55
VIT_17s0000g09890.t01	Wine grape	cytosol	71.54	69.91
PGSC0003DMT400069629	Potato	cytosol	64.07	62.71
Solyc06g071850.2.1	Tomato	nucleus	63.3	61.95
AT5G63200.1	Thale cress	cytosol	62.36	61.79
Bra035851.1-P	Field mustard	cytosol	61.9	60.12
GSMUA_Achr8P09010_001	Banana	cytosol	57.85	59.71
CDY48133	Canola	cytosol	60.96	59.48
CDY16731	Canola	cytosol	61.12	59.46
Os01t0906600-01	Rice	cytosol	54.12	58.1
EES04067	Sorghum	cytosol	54.12	56.86
Zm00001d042450_P002	Maize	cytosol	53.81	56.72
Bra007638.1-P	Field mustard	cytosol	4.98	56.14
CDY08125	Canola	cytosol	5.44	54.69
TraesCS3D01G383400.1	Wheat	cytosol	51.63	54.52
TraesCS3B01G422600.2	Wheat	cytosol	51.48	53.73
TraesCS3A01G390800.2	Wheat	cytosol	51.32	53.57
HORVU3Hr1G088460.2	Barley	cytosol	51.32	53.48
HORVU3Hr1G088480.1	Barley	mitochondrion	51.48	50.92

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100786537	MapMan:35.2	EMBL:ACUP02003511	EnsemblPlantsGene:GLYMA_06G174300	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	UniProt:I1KC83	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
EnsemblPlants:KRH54254	ProteinID:KRH54254	ProteinID:KRH54254.1	PFAM:PF13181	PFAM:PF13424	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR45523	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI00023C2581	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:14713754..14719265

Molecular Weight (calculated)

69996.4 Da

IEP (calculated)

5.738

GRAVY (calculated)

-0.215

Length

643 amino acids

Sequence
(BLAST)

001: MAEKSGAAEE SSNPMAFHHT TTKLVVLADL NVEAEAEAEE DDSSLVPPPL ITILANDENS QDKSSLSKDT DSIEAESKKL NKLSKSRSRK TDSSLDFVAD
101: VDGDQHVQGP PSSREEKVSS VKTGLVHVAR KMPKNAHAHF ILGLMYQRLS QPQKAVLAYE KAEEILLRPE AEIDRPELLS LVQIHHAQCL ILESSSENSS
201: DKELEPDELE EILSKLKESV KSDIRQTAVW NTLGFILLKT GRVKSAVSVL SSLLSIAPEN YDCLGNLGIA YLKIGNLELS AKCFQELILK DQNHPAALVN
301: YAALLLCKYA SVVAGPGASA AEGAMTDQIM SANVAKECLL AAVKADSKSA HVWANLACAF SISGDHRSSS KCLEKAAKLE PNCMSTRYAV AFHRIKEAER
401: SQDPSELLSC AGNEMASIIR DGDSSLVEIP IAWSGLAMVH KAQHEIAAAY ESEQNGLREV EERAVCSLKQ AIAEDPNDAV QWHQLGIHSL CARQFKTSQK
501: YLKAAVACDK DCSYAWATLG VSLQLSEEPS QAEEVYKQAL SLATTKQAHV ILSNLGILYR HQKQYQRAKA MFTKSLELQP GYAPAFNNLG LVFVAEGLLE
601: EAKYCFDKAL QSDPLLDAAK SNLIKVVAMS KLCKGLSSCG LKE

Best Arabidopsis Sequence Match ( AT5G63200.1 )
(BLAST)

001: MDRPETIAVK CEPMTVDSPS RPLKLVVLAD LNFNPPETDD LDSSIPIPTP PPITRLSNEE SHQEGGILTC KEVEPGEVEA KKISKVGKCR SRSKIESSSD
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-containing protein [Source:UniProtKB/TrEMBL;Acc:Q67YJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.