Factsheet for TraesCS1D01G416000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 27562633

msms PMID: 27562633 doi

W Xu, H Lv, M Zhao, Y Li, Y Qi, Z Peng, G Xia, M Wang

Bio-Tech Research Center, Shandong Academy of Agricultural Science, Shandong Provincial Key Laboratory of Genetic Improvement, Ecology and Physiology of Crop, Jinan, 250100, China., The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Science, Shandong University, 27 Shandanan Road, Jinan, Shandong 250100, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G437600.1	Wheat	plastid	97.67	98.36
HORVU1Hr1G089820.2	Barley	plastid	86.25	97.11
TraesCS1A01G408900.1	Wheat	plastid	76.69	89.65
OQU78439	Sorghum	plastid	80.42	79.68
Os05t0568900-01	Rice	plastid	80.65	79.18
Zm00001d009613_P001	Maize	plastid	79.25	73.75
Bra025312.1-P	Field mustard	plastid	74.13	72.6
CDX86460	Canola	plastid	74.13	72.6
CDY58511	Canola	plastid	72.96	71.95
VIT_18s0072g00970.t01	Wine grape	plastid	71.33	71.5
KRH56605	Soybean	plastid	70.63	71.13
GSMUA_Achr1P13970_001	Banana	plastid	73.66	71.01
KRG93298	Soybean	nucleus, plastid	71.33	71.0
PGSC0003DMT400001298	Potato	plastid	70.16	70.0
Zm00001d039059_P001	Maize	plastid	77.86	69.44
Solyc02g086830.2.1	Tomato	plastid	69.46	69.3
AT3G27925.1	Thale cress	plastid	70.63	69.02
Zm00001d020604_P001	Maize	plastid	27.27	46.43
TraesCS5D01G039300.1	Wheat	mitochondrion	30.3	41.8
TraesCS2D01G323700.1	Wheat	plastid	39.63	38.2
TraesCS4D01G084800.2	Wheat	cytosol	24.94	23.01

Protein Annotations

MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006091	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008236
GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009719
GO:GO:0009735	GO:GO:0009987	GO:GO:0010206	GO:GO:0015979	GO:GO:0016020	GO:GO:0016787
GO:GO:0019538	GO:GO:0031977	GO:GO:0042802	InterPro:IPR001478	InterPro:PDZ	InterPro:PDZ_sf
PFAM:PF13180	PFAM:PF13365	PRINTS:PR00834	PFscan:PS50106	PANTHER:PTHR43019	PANTHER:PTHR43019:SF4
InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA	SMART:SM00228	SUPFAM:SSF50156	SUPFAM:SSF50494	EnsemblPlantsGene:TraesCS1D01G416000
EnsemblPlants:TraesCS1D01G416000.1	TIGR:cd00987	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:-:474924446..474927542

Molecular Weight (calculated)

44414.6 Da

IEP (calculated)

9.022

GRAVY (calculated)

0.153

Length

429 amino acids

Sequence
(BLAST)

001: MAAAATACFL SGPSPLARPL SRPRHSLRRL ARAAAARPPA GPLALPASPR RPLRDLVPGP VAEAARRALA AAAGPLVVAL ASAALVLGDA GAASAFVVAT
101: PRKLQADELA TVRLFKDNTP SVVYITNLAV RQDAFTLDVL EVPQGSGSGF VWDKLGHIVT NFHVIRGASD LRVTLADQSV YEAQVVGFDQ DKDVAVLSIE
201: APKDKLRPLP VGVSADLLVG QKVYAIGNPF GLDHTLTTGV ISGLRREISS AATGRPIQDV IQTDAAINPG NSGGPLLDSS GNLIGVNTAI YSPSGASSGV
301: GFSIPVDTVG GIVDQLIQFG KVTRPILGIK FAPDQSVEQL GLSGVLVLDA PPNGPAGKAG LQSTKRDAYG RLILGDIITS VNGTKVANGS DLYRILDQCK
401: VGETVTVEVL RGDKKEKIAV VLEPKLDET

Best Arabidopsis Sequence Match ( AT3G27925.1 )
(BLAST)

001: MATTTSCSLL LSSTLFLHSP PSSHLSFFNL SSSRSSPISL YPIRSKRYFR ILSKLSLNDN NRDDDDDTLH FTPFSAVKPF FLLCTSVALS FSLFAASPAV
101: ESASAFVVST PKKLQTDELA TVRLFQENTP SVVYITNLAV RQDAFTLDVL EVPQGSGSGF VWDKQGHIVT NYHVIRGASD LRVTLADQTT FDAKVVGFDQ
201: DKDVAVLRID APKNKLRPIP VGVSADLLVG QKVFAIGNPF GLDHTLTTGV ISGLRREISS AATGRPIQDV IQTDAAINPG NSGGPLLDSS GTLIGINTAI
301: YSPSGASSGV GFSIPVDTVG GIVDQLVRFG KVTRPILGIK FAPDQSVEQL GVSGVLVLDA PPSGPAGKAG LQSTKRDGYG RLVLGDIITS VNGTKVSNGS
401: DLYRILDQCK VGDEVTVEVL RGDHKEKISV TLEPKPDES

Arabidopsis Description

DEGP1DEGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V823]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.