Factsheet for TraesCS4D01G084800.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G014960.11	Barley	plastid	67.96	81.03
TraesCS4B01G087500.1	Wheat	mitochondrion	72.47	79.86
TraesCS4A01G228900.1	Wheat	mitochondrion	70.54	77.0
Zm00001d049018_P001	Maize	mitochondrion	62.8	68.38
OQU83155	Sorghum	mitochondrion	61.08	66.36
Os11t0246600-00	Rice	mitochondrion	61.51	64.71
GSMUA_Achr9P08110_001	Banana	mitochondrion	56.13	60.56
KRG96820	Soybean	mitochondrion	51.18	55.74
VIT_14s0060g02370.t01	Wine grape	mitochondrion	50.97	54.99
AT5G27660.2	Thale cress	mitochondrion	50.97	54.48
CDX80635	Canola	mitochondrion, plastid	49.68	54.1
GSMUA_Achr8P29040_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	38.49	52.49
CDX86147	Canola	plastid	49.46	52.39
GSMUA_Achr6P28780_001	Banana	mitochondrion	49.25	47.12
TraesCS1D01G416000.1	Wheat	plastid	23.01	24.94
TraesCS5D01G039300.1	Wheat	mitochondrion	16.13	24.12
TraesCS2D01G323700.1	Wheat	plastid	21.72	22.7

Protein Annotations

MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.120	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0005488	GO:GO:0005515	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0019538	InterPro:IPR001478	InterPro:PDZ	InterPro:PDZ_sf	PFAM:PF13180	PFAM:PF13365
PRINTS:PR00834	PFscan:PS50106	PANTHER:PTHR22939	PANTHER:PTHR22939:SF109	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA
SMART:SM00228	SUPFAM:SSF50156	SUPFAM:SSF50494	EnsemblPlantsGene:TraesCS4D01G084800	EnsemblPlants:TraesCS4D01G084800.2	TIGR:cd00987
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:58387479..58400143

Molecular Weight (calculated)

49199.4 Da

IEP (calculated)

8.650

GRAVY (calculated)

0.038

Length

465 amino acids

Sequence
(BLAST)

001: MRRPVRPTIL EQTDHATFLL PQYFFLFSQV QGDPPARSRM FRNPRRAALL LAAGAAAAGA GRLLDRGDSA TVVTVSASAP LRHLLSTAAT GLFSSNPLFA
101: PWQGDFTGSF PILNSFASAS VPPANLSNHA SGGNSDDSRC CPGCLGRNSI ANAAAAVGPA VVNISCMQEN GWLREKSLGS GTIIDPDGTI LTCAHLVTDF
201: QSTKPGLKGK VSVSLQDGRE FEGVVLNFDH HSDIAVLKIK SKTPLPAARL GSSCKLRPGD WVVALGCPLS LQNTVTAGIV SCVDRKSSDL GLGGIRREYL
301: QTDCAINIGN SGGPLVNLDG EIIGVNVMKL RDADGLSFSV PIDYVVKIVE HFKKNGRVVR PWLGLKMLDL NPMVIAQLKE RSSSFPDVSK GVLVPMVTPG
401: SPAERAGFAP GDVVTEFDGK PVETIKEIIG IMGDKVGVPF KVLVKRANNV PVTLTVTPEE ADASR

Best Arabidopsis Sequence Match ( AT5G27660.2 )
(BLAST)

001: MMNFLRRAVS SSKRSELIRI ISVATATSGI LYASTNPDAR TRVSLAIPES VRESLSLLPW QISPGLIHRP EQSLFGNFVF SSRVSPKSEA PINDEKGVSV
101: EASDSSSKPS NGYLGRDTIA NAAARIGPAV VNLSVPQGFH GISMGKSIGS GTIIDADGTI LTCAHVVVDF QNIRHSSKGR VDVTLQDGRT FEGVVVNADL
201: QSDIALVKIK SKTPLPTAKL GFSSKLRPGD WVIAVGCPLS LQNTVTAGIV SCVDRKSSDL GLGGKHREYL QTDCSINAGN SGGPLVNLDG EVIGVNIMKV
301: LAADGLGFSV PIDSVSKIIE HFKKSGRVIR PWIGLKMVEL NNLIVAQLKE RDPMFPDVER GVLVPTVIPG SPADRAGFKP GDVVVRFDGK PVETIKEVIE
401: IMDDRVGKRM QVVVERSNKE RVTLEVIPEE ANPDM

Arabidopsis Description

Trypsin family protein with PDZ domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BBM9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.