CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G014960.11	Barley	plastid	54.8	60.0
VIT_14s0060g02370.t01	Wine grape	mitochondrion	58.31	57.77
GSMUA_Achr9P08110_001	Banana	mitochondrion	57.38	56.84
CDX80635	Canola	mitochondrion, plastid	56.67	56.67
TraesCS4A01G228900.1	Wheat	mitochondrion	56.44	56.57
OQU83155	Sorghum	mitochondrion	55.97	55.84
TraesCS4B01G087500.1	Wheat	mitochondrion	55.04	55.69
Zm00001d049018_P001	Maize	mitochondrion	55.5	55.5
AT5G27660.2	Thale cress	mitochondrion	56.21	55.17
CDX86147	Canola	plastid	56.21	54.67
TraesCS4D01G084800.2	Wheat	cytosol	55.74	51.18
Os11t0246600-00	Rice	mitochondrion	51.52	49.77
GSMUA_Achr8P29040_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	39.11	48.97
GSMUA_Achr6P28780_001	Banana	mitochondrion	46.84	41.15
KRH21081	Soybean	plastid	17.8	25.0
KRH56605	Soybean	plastid	23.89	23.94
KRH11171	Soybean	plastid	15.46	23.49
KRG93298	Soybean	nucleus, plastid	22.72	22.51
KRH18481	Soybean	plastid	23.89	22.22

Protein Annotations

EntrezGene:100777061	MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.120	EMBL:ACUP02012163	EnsemblPlantsGene:GLYMA_19G234200
GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005488	GO:GO:0005515	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	UniProt:I1NBY4	InterPro:IPR001478
EnsemblPlants:KRG96820	ProteinID:KRG96820	ProteinID:KRG96820.1	InterPro:PDZ	InterPro:PDZ_sf	PFAM:PF13180
PFAM:PF13365	PRINTS:PR00834	PANTHER:PTHR22939	PANTHER:PTHR22939:SF109	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA
MEROPS:S01.A08	SMART:SM00228	SUPFAM:SSF50156	SUPFAM:SSF50494	UniParc:UPI000233E8E2	SEG:seg

Description

hypothetical protein

Coordinates

chr19:+:48388173..48393035

Molecular Weight (calculated)

45557.3 Da

IEP (calculated)

8.142

GRAVY (calculated)

0.070

Length

427 amino acids

Sequence
(BLAST)

001: MSCCFLRRFG RFGAVGTAAF GSTLLCSNDS ARFRASVALR VPEPLQNSLW LTCPVLRDLS PQPSPFPDQF GMRLLYSYRV SPVPSSGVSK EASAAAGDES
101: KPHDCFGKDT IANAAAKVGP AVVNIAIPQD FFGITSGKSI GSGTIINKDG TILTAAHVVV DFLGTRGSSK GKIEVTLQDG RTFEGKVINA DLHSDVAILK
201: INSETPLPEA KFGSSSRLRP GDWVIAMGCP LSLQNTVTAG IVSCVDRKSS DLGFSGMPRE YLQTDCAINM GNSGGPLVNM DGEIIGVNIM KVAAADGLSF
301: SVPIDSVCKI LEHFKKSGRV IRPWLGLKML DLNEMIIAQL KKQDPSFPNV NKGILVPMVT PRSPGERAGF FPGDVVIEFD GRPVERLKEV IEVLGDKVGV
401: PIKVLVKRAG DKLVTLTVIP EEANLDV

Best Arabidopsis Sequence Match ( AT5G27660.2 )
(BLAST)

001: MMNFLRRAVS SSKRSELIRI ISVATATSGI LYASTNPDAR TRVSLAIPES VRESLSLLPW QISPGLIHRP EQSLFGNFVF SSRVSPKSEA PINDEKGVSV
101: EASDSSSKPS NGYLGRDTIA NAAARIGPAV VNLSVPQGFH GISMGKSIGS GTIIDADGTI LTCAHVVVDF QNIRHSSKGR VDVTLQDGRT FEGVVVNADL
201: QSDIALVKIK SKTPLPTAKL GFSSKLRPGD WVIAVGCPLS LQNTVTAGIV SCVDRKSSDL GLGGKHREYL QTDCSINAGN SGGPLVNLDG EVIGVNIMKV
301: LAADGLGFSV PIDSVSKIIE HFKKSGRVIR PWIGLKMVEL NNLIVAQLKE RDPMFPDVER GVLVPTVIPG SPADRAGFKP GDVVVRFDGK PVETIKEVIE
401: IMDDRVGKRM QVVVERSNKE RVTLEVIPEE ANPDM

Arabidopsis Description

Trypsin family protein with PDZ domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BBM9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.