Factsheet for Zm00001d049018_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU83155	Sorghum	mitochondrion	85.48	85.28
HORVU4Hr1G014960.11	Barley	plastid	69.32	75.9
TraesCS4B01G087500.1	Wheat	mitochondrion	69.32	70.14
TraesCS4A01G228900.1	Wheat	mitochondrion	66.98	67.14
Os11t0246600-00	Rice	mitochondrion	66.74	64.48
TraesCS4D01G084800.2	Wheat	cytosol	68.38	62.8
GSMUA_Achr9P08110_001	Banana	mitochondrion	62.3	61.72
KRG96820	Soybean	mitochondrion	55.5	55.5
VIT_14s0060g02370.t01	Wine grape	mitochondrion	55.74	55.22
AT5G27660.2	Thale cress	mitochondrion	56.21	55.17
CDX80635	Canola	mitochondrion, plastid	53.86	53.86
GSMUA_Achr8P29040_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	42.15	52.79
CDX86147	Canola	plastid	53.4	51.94
GSMUA_Achr6P28780_001	Banana	mitochondrion	51.05	44.86
Zm00001d000230_P002	Maize	plastid	18.27	25.24
Zm00001d003426_P002	Maize	plastid	26.23	23.05
Zm00001d009613_P001	Maize	plastid	24.36	22.56
Zm00001d039059_P001	Maize	plastid	24.82	22.04
Zm00001d020604_P001	Maize	plastid	10.07	17.06

Protein Annotations

EntrezGene:100277723	MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.120	ProteinID:AQK49366.1	UniProt:B6TZ03
EMBL:EU970218	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005488	GO:GO:0005515
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	InterPro:IPR001478
InterPro:PDZ	InterPro:PDZ_sf	PFAM:PF13180	PFAM:PF13365	PRINTS:PR00834	PFscan:PS50106
PANTHER:PTHR22939	PANTHER:PTHR22939:SF109	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA	SMART:SM00228	SUPFAM:SSF50156
SUPFAM:SSF50494	SignalP:SignalP-noTM	UniParc:UPI000182FBDC	EnsemblPlantsGene:Zm00001d049018	EnsemblPlants:Zm00001d049018_P001	EnsemblPlants:Zm00001d049018_T001
SEG:seg	:	:	:	:	:

Description

Trypsin family protein with PDZ domain

Coordinates

chr4:+:12734554..12739294

Molecular Weight (calculated)

45031.4 Da

IEP (calculated)

8.202

GRAVY (calculated)

0.077

Length

427 amino acids

Sequence
(BLAST)

001: MLLRVGRRAA LLLAATAAFS RLRDPDTAVY VSASPPQPPR QAFSSSAAAE GLRSGTCLFS PYLLPYPFQG FPVLNTFTSA SVSPANNGDQ GSDGSSGDPR
101: CCPACLGRNS IAKAASAVGP AVVNISSMHD MHGWVNEQSI GSGTIIDPDG TILTCAHVVA DFQSTKAIVR RKVSVTLQDG REFEGVVLNA DRLSDIAVVK
201: IKSMTPLPAA RLGSSSQLQP GDWVVALGCP LSLQNTVTAG IVSCVDRKSS DLGLGGLRRE YLQTDCAINQ GNSGGPLVNL DGEIIGVNVM KVRNADGLSF
301: AVPIDSVIKI VDNFNKNGRV VRPWLGLKML DLNPMIIAQL KEKSSTFPDV RKGVLVPMVT PASPAEQAGF RPGDVVVEFG GKPVESIKEI IDIMGDKVGI
401: PFKVLVKRAN NVTVTLTVIP EEADASR

Best Arabidopsis Sequence Match ( AT5G27660.2 )
(BLAST)

001: MMNFLRRAVS SSKRSELIRI ISVATATSGI LYASTNPDAR TRVSLAIPES VRESLSLLPW QISPGLIHRP EQSLFGNFVF SSRVSPKSEA PINDEKGVSV
101: EASDSSSKPS NGYLGRDTIA NAAARIGPAV VNLSVPQGFH GISMGKSIGS GTIIDADGTI LTCAHVVVDF QNIRHSSKGR VDVTLQDGRT FEGVVVNADL
201: QSDIALVKIK SKTPLPTAKL GFSSKLRPGD WVIAVGCPLS LQNTVTAGIV SCVDRKSSDL GLGGKHREYL QTDCSINAGN SGGPLVNLDG EVIGVNIMKV
301: LAADGLGFSV PIDSVSKIIE HFKKSGRVIR PWIGLKMVEL NNLIVAQLKE RDPMFPDVER GVLVPTVIPG SPADRAGFKP GDVVVRFDGK PVETIKEVIE
401: IMDDRVGKRM QVVVERSNKE RVTLEVIPEE ANPDM

Arabidopsis Description

Trypsin family protein with PDZ domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BBM9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.