CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80635	Canola	mitochondrion, plastid	84.74	87.12
AT5G27660.2	Thale cress	mitochondrion	71.75	72.41
HORVU4Hr1G014960.11	Barley	plastid	53.3	60.0
VIT_14s0060g02370.t01	Wine grape	mitochondrion	58.09	59.16
KRG96820	Soybean	mitochondrion	54.67	56.21
GSMUA_Achr9P08110_001	Banana	mitochondrion	55.13	56.15
TraesCS4B01G087500.1	Wheat	mitochondrion	53.3	55.45
OQU83155	Sorghum	mitochondrion	53.08	54.44
Zm00001d049018_P001	Maize	mitochondrion	51.94	53.4
TraesCS4A01G228900.1	Wheat	mitochondrion	51.71	53.29
TraesCS4D01G084800.2	Wheat	cytosol	52.39	49.46
GSMUA_Achr8P29040_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	37.59	48.39
CDY65943	Canola	cytosol, extracellular, plastid	15.95	47.62
Os11t0246600-00	Rice	mitochondrion	47.84	47.51
GSMUA_Achr6P28780_001	Banana	mitochondrion	45.56	41.15
CDY07792	Canola	mitochondrion	19.36	23.42
CDX78844	Canola	plastid	16.63	23.1
CDX74425	Canola	plastid	23.46	22.84
CDY58511	Canola	plastid	22.55	22.76
CDY30272	Canola	plastid	23.01	22.44
CDX86460	Canola	plastid	22.32	22.37
CDX99473	Canola	plastid	15.72	21.97

Protein Annotations

MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.120	GO:A0A078DAT6	EnsemblPlants:CDX86147	ProteinID:CDX86147
ProteinID:CDX86147.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005488	GO:GO:0005515
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00144205001
InterPro:IPR001478	InterPro:PDZ	InterPro:PDZ_sf	PFAM:PF13180	PFAM:PF13365	PRINTS:PR00834
PFscan:PS50106	PANTHER:PTHR22939	PANTHER:PTHR22939:SF109	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA	SMART:SM00228
SUPFAM:SSF50156	SUPFAM:SSF50494	UniParc:UPI0004EDF414	SEG:seg	:	:

Description

BnaA06g28640D

Coordinates

chrLK031845:+:41802..44309

Molecular Weight (calculated)

47224.0 Da

IEP (calculated)

8.863

GRAVY (calculated)

0.007

Length

439 amino acids

Sequence
(BLAST)

001: MNEQLIHQLI QISITRYYFY FFWQRRAVSS SSKRSSVLRI VAVATATSGV IYSTDTGTRI SVAIPEPFQI SQSLIHRTEQ SLFGNLAAFS ARVSPKPEAA
101: ASNDEKRAPV EDSDSVKPPS GGFLGRDTIA NAAARIGPAV VNLSVPQGFH GITTGKSIGS GTIIDADGTI LTCAHVVVDF QSIRQSSKGR VDVTLQDGRT
201: FEGVVLNADL QSDIALVKIN SKTPLPTAKL GFSSKLRPGD WVIAVGCPLS LQNTITAGIV SCVDRKSSDL GLRGTGREYL QTDCAINAGN SGGPLVNLDG
301: EVIGVNIMKV LAADGLGFSV PIDSVSKIIE HFKKSGRVIR PWIGLKMIEL NKMIIAQLKE RYPMFPDVEK GILVPTVIPG SPADRAGFKP GDVVVRFDGK
401: PLIEIMDDRV GQRIRVVVER SSKETVTLEV IPEEANPDM

Best Arabidopsis Sequence Match ( AT5G27660.1 )
(BLAST)

001: RRAVSSSKRS ELIRIISVAT ATSGILYAST NPDARTRVSL AIPESVRESL SLLPWQISPG LIHRPEQSLF GNFVFSSRVS PKSEAPINDE KGVSVEASDS
101: SSKPSNGYLG RDTIANAAAR IGPAVVNLSV PQGFHGISMG KSIGSGTIID ADGTILTCAH VVVDFQNIRH SSKGRVDVTL QDGRTFEGVV VNADLQSDIA
201: LVKIKSKTPL PTAKLGFSSK LRPGDWVIAV GCPLSLQNTV TAGIVSCVDR KSSDLGLGGK HREYLQTDCS INAGNSGGPL VNLDGEVIGV NIMKVLAADG
301: LGFSVPIDSV SKIIEHFKKS GRVIRPWIGL KMVELNNLIV AQLKERDPMF PDVERGVLVP TVIPGSPADR AGFKPGDVVV RFDGKPVIEI MDDRVGKRMQ
401: VVVERSNKER VTLEVIPEEA NPDM

Arabidopsis Description

Trypsin family protein with PDZ domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BBM9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.