Factsheet for TraesCS4A01G228900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G014960.11	Barley	plastid	76.29	83.33
TraesCS4B01G087500.1	Wheat	mitochondrion	78.17	78.91
TraesCS4D01G084800.2	Wheat	cytosol	77.0	70.54
OQU83155	Sorghum	mitochondrion	68.54	68.22
Zm00001d049018_P001	Maize	mitochondrion	67.14	66.98
GSMUA_Achr9P08110_001	Banana	mitochondrion	62.68	61.95
Os11t0246600-00	Rice	mitochondrion	61.97	59.73
KRG96820	Soybean	mitochondrion	56.57	56.44
VIT_14s0060g02370.t01	Wine grape	mitochondrion	54.93	54.29
AT5G27660.2	Thale cress	mitochondrion	54.46	53.33
CDX80635	Canola	mitochondrion, plastid	52.82	52.69
GSMUA_Achr8P29040_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	42.02	52.49
CDX86147	Canola	plastid	53.29	51.71
GSMUA_Achr6P28780_001	Banana	mitochondrion	51.17	44.86
TraesCS1A01G408900.1	Wheat	plastid	22.07	25.61
TraesCS5A01G031100.1	Wheat	mitochondrion	17.84	24.68
TraesCS2A01G339400.1	Wheat	plastid	23.94	22.92

Protein Annotations

MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.120	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0005488	GO:GO:0005515	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0019538	InterPro:IPR001478	InterPro:PDZ	InterPro:PDZ_sf	PFAM:PF13180	PFAM:PF13365
PRINTS:PR00834	PFscan:PS50106	PANTHER:PTHR22939	PANTHER:PTHR22939:SF109	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA
SMART:SM00228	SUPFAM:SSF50156	SUPFAM:SSF50494	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS4A01G228900	EnsemblPlants:TraesCS4A01G228900.1
TIGR:cd00987	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:537433962..537440469

Molecular Weight (calculated)

44604.9 Da

IEP (calculated)

8.273

GRAVY (calculated)

0.113

Length

426 amino acids

Sequence
(BLAST)

001: MFRNPRRAAL LLAAGAAAAG AGHLLDRGDS ATVVTVSASA PLRHLLSTAA TGLFSSNPLF APWQGVFTGG FPILNSFACA SVPPANLSNH ASGGNSDDSR
101: CCPGCLGRNS IANAAAAVGP AVVNISCMQE NGWLREKSLG SGTIIDPDGT ILTCAHLVTD FQSTKPGLKG KVSVSLQDGR EFEGIVLNFD HHSDIAVLKI
201: KSKTPLPAAR LGSSCKLRPG DWVVALGCPL SLQNTVTAGI VSCVDRKSSD LGLGGIRREY LQTDCAINIG NSGGPLVNLD GEIIGVNVMK LRDADGLSFS
301: VPIDYVVKIV EHFKKNGRVV RPWLGLKMLD LNPMVIAQLK ERSSSFPDVS KGVLVPMVTP GSPAERAGFA PGDVVTEFDG KPVETIKEII GIMGDKVGVP
401: FKVLVKRANN VHVTLTVTPE EADASR

Best Arabidopsis Sequence Match ( AT5G27660.2 )
(BLAST)

001: MMNFLRRAVS SSKRSELIRI ISVATATSGI LYASTNPDAR TRVSLAIPES VRESLSLLPW QISPGLIHRP EQSLFGNFVF SSRVSPKSEA PINDEKGVSV
101: EASDSSSKPS NGYLGRDTIA NAAARIGPAV VNLSVPQGFH GISMGKSIGS GTIIDADGTI LTCAHVVVDF QNIRHSSKGR VDVTLQDGRT FEGVVVNADL
201: QSDIALVKIK SKTPLPTAKL GFSSKLRPGD WVIAVGCPLS LQNTVTAGIV SCVDRKSSDL GLGGKHREYL QTDCSINAGN SGGPLVNLDG EVIGVNIMKV
301: LAADGLGFSV PIDSVSKIIE HFKKSGRVIR PWIGLKMVEL NNLIVAQLKE RDPMFPDVER GVLVPTVIPG SPADRAGFKP GDVVVRFDGK PVETIKEVIE
401: IMDDRVGKRM QVVVERSNKE RVTLEVIPEE ANPDM

Arabidopsis Description

Trypsin family protein with PDZ domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BBM9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.