CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86147	Canola	plastid	87.12	84.74
AT5G27660.2	Thale cress	mitochondrion	76.81	75.4
VIT_14s0060g02370.t01	Wine grape	mitochondrion	62.3	61.72
HORVU4Hr1G014960.11	Barley	plastid	55.04	60.26
KRG96820	Soybean	mitochondrion	56.67	56.67
GSMUA_Achr9P08110_001	Banana	mitochondrion	56.67	56.15
TraesCS4B01G087500.1	Wheat	mitochondrion	53.86	54.5
Zm00001d049018_P001	Maize	mitochondrion	53.86	53.86
OQU83155	Sorghum	mitochondrion	53.86	53.74
TraesCS4A01G228900.1	Wheat	mitochondrion	52.69	52.82
TraesCS4D01G084800.2	Wheat	cytosol	54.1	49.68
GSMUA_Achr8P29040_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	38.64	48.39
CDY65943	Canola	cytosol, extracellular, plastid	16.39	47.62
Os11t0246600-00	Rice	mitochondrion	48.95	47.29
GSMUA_Achr6P28780_001	Banana	mitochondrion	46.84	41.15
CDY07792	Canola	mitochondrion	21.31	25.07
CDX99473	Canola	plastid	17.33	23.57
CDX78844	Canola	plastid	17.1	23.1
CDY58511	Canola	plastid	23.42	22.99
CDX74425	Canola	plastid	24.12	22.84
CDX86460	Canola	plastid	23.42	22.83
CDY30272	Canola	plastid	23.42	22.22

Protein Annotations

MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.120	GO:A0A078CUZ1	EnsemblPlants:CDX80635	ProteinID:CDX80635
ProteinID:CDX80635.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005488	GO:GO:0005515
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00133774001
InterPro:IPR001478	InterPro:PDZ	InterPro:PDZ_sf	PFAM:PF13180	PFAM:PF13365	PRINTS:PR00834
PFscan:PS50106	PANTHER:PTHR22939	PANTHER:PTHR22939:SF109	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA	SMART:SM00228
SUPFAM:SSF50156	SUPFAM:SSF50494	UniParc:UPI0004EDDC73	SEG:seg	:	:

Description

BnaC07g28090D

Coordinates

chrLK031821:+:1770156..1772724

Molecular Weight (calculated)

45324.7 Da

IEP (calculated)

8.320

GRAVY (calculated)

0.018

Length

427 amino acids

Sequence
(BLAST)

001: MMNLLGSAVS SSKRSSVLRV VAVATATSGV VYSTDTGTRI SVAIPESIQE SKSLPWQFSQ SLIHRTEQSL FGNLAAFSAR VSPKPEAAAS NDEKRAPVED
101: SDSVKPPSGG FLGRDTIANA AARIGPAVVN LSVPQGFHGI TTGKSIGSGT IIDADGTILT CAHVVVDFQS IRQSSKGRVD VTLQDGRTFE GVVLNADLQS
201: DIALVKINSK TPLPTAKLGF SSKLRPGDWV IAVGCPLSLQ NTITAGIVSC VDRKSSDLGL RGTGREYLQT DCAINAGNSG GPLVNLDGEV IGVNIMKVLA
301: ADGLGFSVPI DSVSKIIEHF KKSGRVIRPW IGLKMIELNK MIIAQLKERY PMFPDVEKGI LVPTVIPGSP ADRAGFKPGD VVVRFDGKPL IEIMDDRVGQ
401: RIRVVVERSS KETVTLEVIP EEANPDM

Best Arabidopsis Sequence Match ( AT5G27660.2 )
(BLAST)

001: MMNFLRRAVS SSKRSELIRI ISVATATSGI LYASTNPDAR TRVSLAIPES VRESLSLLPW QISPGLIHRP EQSLFGNFVF SSRVSPKSEA PINDEKGVSV
101: EASDSSSKPS NGYLGRDTIA NAAARIGPAV VNLSVPQGFH GISMGKSIGS GTIIDADGTI LTCAHVVVDF QNIRHSSKGR VDVTLQDGRT FEGVVVNADL
201: QSDIALVKIK SKTPLPTAKL GFSSKLRPGD WVIAVGCPLS LQNTVTAGIV SCVDRKSSDL GLGGKHREYL QTDCSINAGN SGGPLVNLDG EVIGVNIMKV
301: LAADGLGFSV PIDSVSKIIE HFKKSGRVIR PWIGLKMVEL NNLIVAQLKE RDPMFPDVER GVLVPTVIPG SPADRAGFKP GDVVVRFDGK PVETIKEVIE
401: IMDDRVGKRM QVVVERSNKE RVTLEVIPEE ANPDM

Arabidopsis Description

Trypsin family protein with PDZ domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BBM9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.