CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07792	Canola	mitochondrion	58.5	23.69
CDX80635	Canola	mitochondrion, plastid	47.62	16.39
CDX86147	Canola	plastid	47.62	15.95
CDX99473	Canola	plastid	34.01	15.92
CDX78844	Canola	plastid	34.01	15.82
CDY30272	Canola	plastid	35.37	11.56
CDX74425	Canola	plastid	35.37	11.53
CDX86460	Canola	plastid	33.33	11.19
CDY58511	Canola	plastid	32.65	11.03

Protein Annotations

MapMan:19.4.2.3	Gene3D:2.40.10.120	GO:A0A078JEA1	UniProt:A0A078JEA1	EnsemblPlants:CDY65943	ProteinID:CDY65943
ProteinID:CDY65943.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00051049001	PFAM:PF13365	PRINTS:PR00834
PANTHER:PTHR22939	PANTHER:PTHR22939:SF109	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA	SUPFAM:SSF50494	UniParc:UPI0004EE5825
SEG:seg	:	:	:	:	:

Description

BnaCnng49140DBnaCnng49140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JEA1]

Coordinates

chrLK035015:+:12436..13029

Molecular Weight (calculated)

15654.0 Da

IEP (calculated)

4.862

GRAVY (calculated)

0.303

Length

147 amino acids

Sequence
(BLAST)

001: MITTSLGQTF VGAVADYDLD YDLALVKIES PVSLSPAKFG SSSLLAVGDF VLSVGNPLGY ANTFSMGIIS CLKRSQHVLR LEGKCKVYLQ TDCWLHEGSS
101: GGALVNLEGE VIGLNCGHGE AEVGVGFAIP IGTVLKVMKE RRWLCED

Best Arabidopsis Sequence Match ( AT5G27660.2 )
(BLAST)

001: MMNFLRRAVS SSKRSELIRI ISVATATSGI LYASTNPDAR TRVSLAIPES VRESLSLLPW QISPGLIHRP EQSLFGNFVF SSRVSPKSEA PINDEKGVSV
101: EASDSSSKPS NGYLGRDTIA NAAARIGPAV VNLSVPQGFH GISMGKSIGS GTIIDADGTI LTCAHVVVDF QNIRHSSKGR VDVTLQDGRT FEGVVVNADL
201: QSDIALVKIK SKTPLPTAKL GFSSKLRPGD WVIAVGCPLS LQNTVTAGIV SCVDRKSSDL GLGGKHREYL QTDCSINAGN SGGPLVNLDG EVIGVNIMKV
301: LAADGLGFSV PIDSVSKIIE HFKKSGRVIR PWIGLKMVEL NNLIVAQLKE RDPMFPDVER GVLVPTVIPG SPADRAGFKP GDVVVRFDGK PVETIKEVIE
401: IMDDRVGKRM QVVVERSNKE RVTLEVIPEE ANPDM

Arabidopsis Description

Trypsin family protein with PDZ domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BBM9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.