CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86460	Canola	plastid	84.83	84.25
AT3G27925.1	Thale cress	plastid	82.76	82.0
HORVU1Hr1G089820.2	Barley	plastid	70.57	80.58
VIT_18s0072g00970.t01	Wine grape	plastid	77.47	78.74
KRG93298	Soybean	nucleus, plastid	76.32	77.03
KRH56605	Soybean	plastid	74.25	75.82
OQU78439	Sorghum	plastid	74.94	75.29
Solyc02g086830.2.1	Tomato	plastid	72.64	73.49
TraesCS1B01G437600.1	Wheat	plastid	71.95	73.47
TraesCS1D01G416000.1	Wheat	plastid	71.95	72.96
Os05t0568900-01	Rice	plastid	72.41	72.08
TraesCS1A01G408900.1	Wheat	plastid	60.46	71.66
GSMUA_Achr1P13970_001	Banana	plastid	72.87	71.24
PGSC0003DMT400001298	Potato	plastid	70.34	71.16
Zm00001d009613_P001	Maize	plastid	73.56	69.41
Zm00001d039059_P001	Maize	plastid	72.87	65.9
HORVU3Hr1G101230.2	Barley	plastid	40.46	58.86
Zm00001d020604_P001	Maize	plastid	26.21	45.24
CDY30272	Canola	plastid	39.77	38.44
CDX74425	Canola	plastid	39.54	38.14
CDX78844	Canola	plastid	27.59	37.97
CDX99473	Canola	plastid	26.67	36.94
CDY65943	Canola	cytosol, extracellular, plastid	11.03	32.65
CDX80635	Canola	mitochondrion, plastid	22.99	23.42
CDX86147	Canola	plastid	22.76	22.55
CDY07792	Canola	mitochondrion	16.55	19.83

Protein Annotations

MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.10	GO:A0A078J0A3	UniProt:A0A078J0A3	EnsemblPlants:CDY58511
ProteinID:CDY58511	ProteinID:CDY58511.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005488
GO:GO:0005515	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00024798001	InterPro:IPR001478	InterPro:PDZ	InterPro:PDZ_sf	PFAM:PF13180	PFAM:PF13365
PRINTS:PR00834	PFscan:PS50106	PANTHER:PTHR43343	PANTHER:PTHR43343:SF3	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA
SMART:SM00228	SUPFAM:SSF50156	SUPFAM:SSF50494	UniParc:UPI0004EB4C60	SEG:seg	:

Description

BnaCnng33260DBnaCnng33260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0A3]

Coordinates

chrLK033675:-:5369..7921

Molecular Weight (calculated)

46021.1 Da

IEP (calculated)

6.679

GRAVY (calculated)

0.061

Length

435 amino acids

Sequence
(BLAST)

001: MATSSSPLLS TLFLHSPPSS SRISNGSFFN PSPRSLSLYP VRSRRCLRIL SKLPLDDTDN DDCALLPRLS AAVKPFLLLC TSVALSFSLF AVSPAVESAA
101: AFVVTTPRKL QTDELATVRL FQENTPSVVY ITNLAVRQDA FTLDVLEVPQ GSGSGFVWDK KGHIVTNYHV IRGASDLRVT LADQSTYDAK VVGFDQDKDV
201: AVLRVDAPKD KLRPIPVGIS ADLLVGQKVF AIGNPFGLDH TLTTGVISGL RREISSAATG RPIQDVIQTD AAINPGNSGG PLLDSSGTLI GINTAIYSPS
301: GASSGVGFSI PVDTVGGIVD QLVRFGKVTR PILGIKFAPD QSVEQLGVSG VLVLDAPPTG PAGKAGLQST KRDGYGRLIL GDIITSVNGT KVTNGSDLYR
401: ILDQCKVGDE VTVEVLRGDH KEKISVTLEP KADET

Best Arabidopsis Sequence Match ( AT3G27925.1 )
(BLAST)

001: MATTTSCSLL LSSTLFLHSP PSSHLSFFNL SSSRSSPISL YPIRSKRYFR ILSKLSLNDN NRDDDDDTLH FTPFSAVKPF FLLCTSVALS FSLFAASPAV
101: ESASAFVVST PKKLQTDELA TVRLFQENTP SVVYITNLAV RQDAFTLDVL EVPQGSGSGF VWDKQGHIVT NYHVIRGASD LRVTLADQTT FDAKVVGFDQ
201: DKDVAVLRID APKNKLRPIP VGVSADLLVG QKVFAIGNPF GLDHTLTTGV ISGLRREISS AATGRPIQDV IQTDAAINPG NSGGPLLDSS GTLIGINTAI
301: YSPSGASSGV GFSIPVDTVG GIVDQLVRFG KVTRPILGIK FAPDQSVEQL GVSGVLVLDA PPSGPAGKAG LQSTKRDGYG RLVLGDIITS VNGTKVSNGS
401: DLYRILDQCK VGDEVTVEVL RGDHKEKISV TLEPKPDES

Arabidopsis Description

DEGP1DEGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V823]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.