Factsheet for Zm00001d009613_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU78439	Sorghum	plastid	83.3	88.68
HORVU1Hr1G089820.2	Barley	plastid	72.23	87.4
TraesCS1A01G408900.1	Wheat	plastid	64.64	81.2
TraesCS1B01G437600.1	Wheat	plastid	74.62	80.75
TraesCS1D01G416000.1	Wheat	plastid	73.75	79.25
Zm00001d039059_P001	Maize	plastid	82.43	79.0
Os05t0568900-01	Rice	plastid	73.97	78.03
HORVU3Hr1G101230.2	Barley	plastid	48.16	74.25
CDY58511	Canola	plastid	69.41	73.56
VIT_18s0072g00970.t01	Wine grape	plastid	68.11	73.36
KRH56605	Soybean	plastid	67.46	73.0
CDX86460	Canola	plastid	69.2	72.83
Bra025312.1-P	Field mustard	plastid	69.2	72.83
KRG93298	Soybean	nucleus, plastid	67.68	72.39
GSMUA_Achr1P13970_001	Banana	plastid	69.2	71.69
AT3G27925.1	Thale cress	plastid	68.11	71.53
Solyc02g086830.2.1	Tomato	plastid	66.59	71.4
PGSC0003DMT400001298	Potato	plastid	65.29	70.0
Zm00001d020604_P001	Maize	plastid	31.45	57.54
Zm00001d000230_P002	Maize	plastid	27.33	40.78
Zm00001d003426_P002	Maize	plastid	36.01	34.16
Zm00001d049018_P001	Maize	mitochondrion	22.56	24.36

Protein Annotations

MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.10	UniProt:A0A1D6FKP2	ProteinID:AQK92283.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005488	GO:GO:0005515	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0016787	GO:GO:0019538	InterPro:IPR001478	InterPro:PDZ
InterPro:PDZ_sf	PFAM:PF13180	PFAM:PF13365	PRINTS:PR00834	PFscan:PS50106	PANTHER:PTHR43343
PANTHER:PTHR43343:SF3	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA	SMART:SM00228	SUPFAM:SSF50156	SUPFAM:SSF50494
UniParc:UPI0008458067	EnsemblPlantsGene:Zm00001d009613	EnsemblPlants:Zm00001d009613_P001	EnsemblPlants:Zm00001d009613_T001	SEG:seg	:

Description

Protease Do-like 1 chloroplastic

Coordinates

chr8:-:73135977..73145220

Molecular Weight (calculated)

48326.2 Da

IEP (calculated)

7.979

GRAVY (calculated)

0.162

Length

461 amino acids

Sequence
(BLAST)

001: MAAPSSAATA CFVSPLPPPR RPRHFLRHLA RAAAAEPTPA SASSFALPSP WPWARRLRDL VPAEAAGRLL SSAAGSLIVA LASASLVLGD AGAASAFVVS
101: TPRKLQADEL ATVRLFQENT PSVVYITNLA VRQDAFTLDV LEVPQGSGSG FVWDKSGHIV TNFHVIRGAS DLRLVGTPEG FMLSFYVFLA VCGKAKIQLI
201: VLCRVTLADQ SVYEAQVVGF DQDKDVAVLR IEAPKDKLRP IPVGVSADLL VGQKVYAIGN PFGLDHTLTT GVISGLRREI SSAATGRPIQ DVIQTDAAIN
301: PGNSGGPLLD SSGNLIGVNT AIYSPSGASS GVGFSIPVDT VGGIVDQLIR FGKVTRPILG VKFAPDQSVE QLGLSGVLVL DAPPNGPAGK AGLQPTKRDP
401: YGRLILGDII TSVNGTKVTN GSDLYRILDQ CKVGETVTVE VLRGDHKEKI PVVLEPKADE S

Best Arabidopsis Sequence Match ( AT3G27925.1 )
(BLAST)

001: MATTTSCSLL LSSTLFLHSP PSSHLSFFNL SSSRSSPISL YPIRSKRYFR ILSKLSLNDN NRDDDDDTLH FTPFSAVKPF FLLCTSVALS FSLFAASPAV
101: ESASAFVVST PKKLQTDELA TVRLFQENTP SVVYITNLAV RQDAFTLDVL EVPQGSGSGF VWDKQGHIVT NYHVIRGASD LRVTLADQTT FDAKVVGFDQ
201: DKDVAVLRID APKNKLRPIP VGVSADLLVG QKVFAIGNPF GLDHTLTTGV ISGLRREISS AATGRPIQDV IQTDAAINPG NSGGPLLDSS GTLIGINTAI
301: YSPSGASSGV GFSIPVDTVG GIVDQLVRFG KVTRPILGIK FAPDQSVEQL GVSGVLVLDA PPSGPAGKAG LQSTKRDGYG RLVLGDIITS VNGTKVSNGS
401: DLYRILDQCK VGDEVTVEVL RGDHKEKISV TLEPKPDES

Arabidopsis Description

DEGP1DEGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V823]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.