Factsheet for GSMUA_Achr1P13970_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G089820.2	Barley	plastid	69.89	81.63
OQU78439	Sorghum	plastid	73.26	75.29
VIT_18s0072g00970.t01	Wine grape	plastid	72.13	75.0
KRH56605	Soybean	plastid	71.69	74.88
KRG93298	Soybean	nucleus, plastid	72.13	74.48
TraesCS1B01G437600.1	Wheat	plastid	71.01	74.18
Os05t0568900-01	Rice	plastid	72.81	74.14
TraesCS1D01G416000.1	Wheat	plastid	71.01	73.66
CDY58511	Canola	plastid	71.24	72.87
Solyc02g086830.2.1	Tomato	plastid	69.66	72.09
Bra025312.1-P	Field mustard	plastid	70.79	71.92
CDX86460	Canola	plastid	70.79	71.92
PGSC0003DMT400001298	Potato	plastid	69.44	71.86
AT3G27925.1	Thale cress	plastid	70.56	71.53
TraesCS1A01G408900.1	Wheat	plastid	58.65	71.12
Zm00001d009613_P001	Maize	plastid	71.69	69.2
Zm00001d039059_P001	Maize	plastid	70.79	65.49
HORVU3Hr1G101230.2	Barley	plastid	39.55	58.86
Zm00001d020604_P001	Maize	plastid	26.74	47.22
GSMUA_Achr10P...	Banana	mitochondrion	39.78	45.38
GSMUA_Achr9P08110_001	Banana	mitochondrion	24.49	25.29
GSMUA_Achr8P29040_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	17.75	23.17
GSMUA_Achr6P28780_001	Banana	mitochondrion	22.92	20.99

Protein Annotations

MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006091	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008236
GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009719
GO:GO:0009735	GO:GO:0009987	GO:GO:0010206	GO:GO:0015979	GO:GO:0016020	GO:GO:0016787
GO:GO:0019538	GO:GO:0031977	GO:GO:0042802	EnsemblPlantsGene:GSMUA_Achr1G13970_001	EnsemblPlants:GSMUA_Achr1P13970_001	EnsemblPlants:GSMUA_Achr1T13970_001
InterPro:IPR001478	UniProt:M0RZQ5	InterPro:PDZ	InterPro:PDZ_sf	PFAM:PF13180	PFAM:PF13365
PRINTS:PR00834	PFscan:PS50106	PANTHER:PTHR43343	PANTHER:PTHR43343:SF3	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA
SMART:SM00228	SUPFAM:SSF50156	SUPFAM:SSF50494	UniParc:UPI000296AC1E	SEG:seg	:

Description

Protease Do-like 1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr1G13970_001]

Coordinates

chr1:-:10662329..10667211

Molecular Weight (calculated)

46741.9 Da

IEP (calculated)

7.553

GRAVY (calculated)

0.095

Length

445 amino acids

Sequence
(BLAST)

001: MAAAAAAVAS SSSPLSLFSC FSSSSSSSKS PSHSPRLIRA FGPNFSTSVP PRLLLKRSDK SIACPSRIFL LLQRLTPIAA TSGLFESVIT VLASVALSAS
101: LLVSDVDPAS AFVVTTPRRL QSDELATVRL FQENTPSVVY ITNLAARQDA FTLDVLEVPQ GSGSGFVWDK DGHIVTNYHV IRGASDLRVT LADQTTYEAR
201: VVGFDQDKDV AVLRIDAPKE KLRPIPVGIS SDLLVGQKVY AIGNPFGLDH TLTTGVISGL RREISSAATG RPIQDVIQTD AAINPGNSGG PLLDSSGNLI
301: GINTAIYSPS GASSGVGFSI PVDTVNGIVD QIVKFGKVTR PILGIKFAPD QSVEQLGVSG VLVLDAPANG PAGKAGLQPT KRDAYGRLIL GDIITSVNGK
401: KVTNGSDLYR ILDQCKVGDT VTVEVLRGDH KEKISVVLEP KPDES

Best Arabidopsis Sequence Match ( AT3G27925.1 )
(BLAST)

001: MATTTSCSLL LSSTLFLHSP PSSHLSFFNL SSSRSSPISL YPIRSKRYFR ILSKLSLNDN NRDDDDDTLH FTPFSAVKPF FLLCTSVALS FSLFAASPAV
101: ESASAFVVST PKKLQTDELA TVRLFQENTP SVVYITNLAV RQDAFTLDVL EVPQGSGSGF VWDKQGHIVT NYHVIRGASD LRVTLADQTT FDAKVVGFDQ
201: DKDVAVLRID APKNKLRPIP VGVSADLLVG QKVFAIGNPF GLDHTLTTGV ISGLRREISS AATGRPIQDV IQTDAAINPG NSGGPLLDSS GTLIGINTAI
301: YSPSGASSGV GFSIPVDTVG GIVDQLVRFG KVTRPILGIK FAPDQSVEQL GVSGVLVLDA PPSGPAGKAG LQSTKRDGYG RLVLGDIITS VNGTKVSNGS
401: DLYRILDQCK VGDEVTVEVL RGDHKEKISV TLEPKPDES

Arabidopsis Description

DEGP1DEGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V823]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.