Factsheet for Zm00001d039059_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G089820.2	Barley	plastid	67.98	85.83
OQU78439	Sorghum	plastid	76.51	84.99
Zm00001d009613_P001	Maize	plastid	79.0	82.43
TraesCS1A01G408900.1	Wheat	plastid	60.71	79.56
TraesCS1B01G437600.1	Wheat	plastid	69.44	78.4
TraesCS1D01G416000.1	Wheat	plastid	69.44	77.86
Os05t0568900-01	Rice	plastid	69.23	76.2
KRH56605	Soybean	plastid	64.86	73.24
CDY58511	Canola	plastid	65.9	72.87
VIT_18s0072g00970.t01	Wine grape	plastid	64.66	72.66
KRG93298	Soybean	nucleus, plastid	64.86	72.39
CDX86460	Canola	plastid	65.7	72.15
Bra025312.1-P	Field mustard	plastid	65.7	72.15
Solyc02g086830.2.1	Tomato	plastid	63.83	71.4
AT3G27925.1	Thale cress	plastid	64.66	70.84
GSMUA_Achr1P13970_001	Banana	plastid	65.49	70.79
PGSC0003DMT400001298	Potato	plastid	62.16	69.53
HORVU3Hr1G101230.2	Barley	plastid	42.2	67.89
Zm00001d020604_P001	Maize	plastid	26.61	50.79
Zm00001d000230_P002	Maize	plastid	25.99	40.45
Zm00001d003426_P002	Maize	plastid	34.1	33.74
Zm00001d049018_P001	Maize	mitochondrion	22.04	24.82

Protein Annotations

MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.10	UniProt:A0A1D6MD76	ProteinID:AQK88627.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005488	GO:GO:0005515	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0016787	GO:GO:0019538	InterPro:IPR001478	InterPro:PDZ
InterPro:PDZ_sf	PFAM:PF13180	PFAM:PF13365	PRINTS:PR00834	PFscan:PS50106	PANTHER:PTHR43019
PANTHER:PTHR43019:SF4	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA	SMART:SM00228	SUPFAM:SSF50156	SUPFAM:SSF50494
UniParc:UPI000842F15D	EnsemblPlantsGene:Zm00001d039059	EnsemblPlants:Zm00001d039059_P001	EnsemblPlants:Zm00001d039059_T001	SEG:seg	:

Description

Protease Do-like 1 chloroplastic

Coordinates

chr6:-:169394180..169398433

Molecular Weight (calculated)

49813.7 Da

IEP (calculated)

7.835

GRAVY (calculated)

0.161

Length

481 amino acids

Sequence
(BLAST)

001: MSAAASSATA CFLSPLPPPR RPRHFLRHLA RAAVTKPEPA SASSLALPSP WLWARRLCEL VPAEAGGRLL SSAAGSLIVA LASASLVLGD TGAASAFVVS
101: TPRKLQADEL ATVRLFQENT PSVVYITNLA VRWASASPFL AAPPAQSPGL FVVCLNSGAL SSSGLQSEAG GGPLISSACY VCRQDAFTLD VLEVPQGSGS
201: GFVWDKSGHI VTNFHVIRGA SDLRVTLADQ SVYEAQVVGF DQDKDVAVLG IKAPKNKLRP IPVGVSADLL VGQKVYAIGN PFGLDHTLTT GVISGLRREI
301: SSAATGRPIQ DVIQTDAAIN PGNSGGPLLD SSGNLIGVNT AIYSPSGASS GVGFSIPVDT VGGIVDQLIK FGRVTRPILG IKFAPDQSVE QLGLSGVLVL
401: DAPPNGPAGK AGLQATKRDP YGRLILGDII TSVNGTKVTN GSDLYRILDQ CKVGDTVTVE VLRGDHKEKI PVVLEPKADE S

Best Arabidopsis Sequence Match ( AT3G27925.1 )
(BLAST)

001: MATTTSCSLL LSSTLFLHSP PSSHLSFFNL SSSRSSPISL YPIRSKRYFR ILSKLSLNDN NRDDDDDTLH FTPFSAVKPF FLLCTSVALS FSLFAASPAV
101: ESASAFVVST PKKLQTDELA TVRLFQENTP SVVYITNLAV RQDAFTLDVL EVPQGSGSGF VWDKQGHIVT NYHVIRGASD LRVTLADQTT FDAKVVGFDQ
201: DKDVAVLRID APKNKLRPIP VGVSADLLVG QKVFAIGNPF GLDHTLTTGV ISGLRREISS AATGRPIQDV IQTDAAINPG NSGGPLLDSS GTLIGINTAI
301: YSPSGASSGV GFSIPVDTVG GIVDQLVRFG KVTRPILGIK FAPDQSVEQL GVSGVLVLDA PPSGPAGKAG LQSTKRDGYG RLVLGDIITS VNGTKVSNGS
401: DLYRILDQCK VGDEVTVEVL RGDHKEKISV TLEPKPDES

Arabidopsis Description

DEGP1DEGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V823]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.