Factsheet for Zm00001d000230_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16390	Sorghum	plastid	79.61	79.87
VIT_00s1450g00010.t01	Wine grape	cytosol, peroxisome	39.48	76.25
TraesCS5A01G031100.1	Wheat	mitochondrion	75.08	75.32
TraesCS5B01G030700.1	Wheat	mitochondrion, plastid, vacuole	73.14	73.62
TraesCS5D01G039300.1	Wheat	mitochondrion	73.79	73.31
VIT_10s0003g03850.t01	Wine grape	cytosol, peroxisome, plastid	53.4	70.82
HORVU5Hr1G008160.5	Barley	mitochondrion	71.2	65.48
KRH21081	Soybean	plastid	57.28	58.22
KRH11171	Soybean	plastid	51.46	56.58
PGSC0003DMT400076806	Potato	plastid	54.69	55.96
Solyc08g048550.2.1	Tomato	plastid	53.07	53.59
CDX99473	Canola	plastid	52.1	51.27
Bra013300.1-P	Field mustard	plastid	52.1	50.95
CDX78844	Canola	plastid	52.1	50.95
AT4G18370.1	Thale cress	plastid	52.43	50.15
Os12t0616600-01	Rice	plastid, vacuole	24.92	49.36
VIT_00s1463g00010.t01	Wine grape	plastid	12.95	30.3
Zm00001d009613_P001	Maize	plastid	40.78	27.33
Zm00001d039059_P001	Maize	plastid	40.45	25.99
Zm00001d003426_P002	Maize	plastid	40.78	25.93
Zm00001d020604_P001	Maize	plastid	18.45	22.62
Zm00001d049018_P001	Maize	mitochondrion	25.24	18.27

Protein Annotations

EntrezGene:100282647	MapMan:19.4.2.3	Gene3D:2.40.10.10	UniProt:B4FVF7	EMBL:BT041095	EMBL:EU961759
GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009507	GO:GO:0009536	GO:GO:0009543	GO:GO:0009579	GO:GO:0009987	GO:GO:0010206
GO:GO:0015979	GO:GO:0016787	GO:GO:0019538	GO:GO:0031977	PFAM:PF13365	PRINTS:PR00834
PANTHER:PTHR43019	PANTHER:PTHR43019:SF3	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA	MEROPS:S01.441	SUPFAM:SSF50494
UniParc:UPI00017B78F5	EnsemblPlantsGene:Zm00001d000230	EnsemblPlants:Zm00001d000230_P002	EnsemblPlants:Zm00001d000230_T002	SEG:seg	:

Description

Protease Do-like 5 chloroplastic

Coordinates

chrB73V4_ctg98:-:35084..39721

Molecular Weight (calculated)

32183.1 Da

IEP (calculated)

7.596

GRAVY (calculated)

-0.125

Length

309 amino acids

Sequence
(BLAST)

001: MALRPQLLRL LLPSPPHRNP PPPPSSPSVA PIGRRTAAAA VLLLAAGVSA PPPRAARAEP DGEDVDEARI VRLFQEASPS VVFIKDLVVA GPQGRRVGED
101: EDGDEEGGGA KVEGTGSGFV WDSTGHIVTN YHVVAKLAGD GSASHRCKVF LEGSGGKSYS KEARLIGCDP AYDLAVLKID ADRDQLRPAL IGTSRSLRVG
201: QSCFAIGNPY GYEHTLTTGV ISGLGREIPS PNGRAIRGAI QTDTAINAGN SGGPLIDSYG HVIGVNTATF TRKGSGISSG VNFAIPIDTV VQSVPNLIVY
301: GTSVSNRFY

Best Arabidopsis Sequence Match ( AT4G18370.1 )
(BLAST)

001: MTMALASSKA FSSIFNTLSP INQSKFVLAC SGSNHVDVID RRRRIMIFGS SLALTSSLLG SNQQRLPMES AIALEQFKEK EEELEEEEER NVNLFQKTSP
101: SVVYIEAIEL PKTSSGDILT DEENGKIEGT GSGFVWDKLG HIVTNYHVIA KLATDQFGLQ RCKVSLVDAK GTRFSKEGKI VGLDPDNDLA VLKIETEGRE
201: LNPVVLGTSN DLRVGQSCFA IGNPYGYENT LTIGVVSGLG REIPSPNGKS ISEAIQTDAD INSGNSGGPL LDSYGHTIGV NTATFTRKGS GMSSGVNFAI
301: PIDTVVRTVP YLIVYGTAYR DRF

Arabidopsis Description

DEGP5Protease Do-like 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SEL7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.