Factsheet for VIT_10s0003g03850.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
peroxisome 1
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1450g00010.t01	Wine grape	cytosol, peroxisome	66.09	96.25
KRH21081	Soybean	plastid	86.27	66.12
KRH11171	Soybean	plastid	74.68	61.92
TraesCS5A01G031100.1	Wheat	mitochondrion	71.24	53.9
TraesCS5B01G030700.1	Wheat	mitochondrion, plastid, vacuole	70.82	53.75
Zm00001d000230_P002	Maize	plastid	70.82	53.4
TraesCS5D01G039300.1	Wheat	mitochondrion	71.24	53.38
EES16390	Sorghum	plastid	69.96	52.92
HORVU5Hr1G008160.5	Barley	mitochondrion	70.39	48.81
VIT_00s1463g00010.t01	Wine grape	plastid	18.03	31.82
VIT_14s0108g00580.t01	Wine grape	cytosol	45.49	25.3
Os12t0616600-01	Rice	plastid, vacuole	16.31	24.36
VIT_18s0072g00970.t01	Wine grape	plastid	42.49	23.13
VIT_14s0060g02370.t01	Wine grape	mitochondrion	29.61	16.01

Protein Annotations

EntrezGene:100243001	wikigene:100243001	EntrezGene:100260091	wikigene:100260091	MapMan:19.4.2.3	Gene3D:2.40.10.10
ProteinID:CBI23552	ProteinID:CBI23552.3	ProteinID:CCB55807	ProteinID:CCB55807.1	UniProt:F6HLT3	EMBL:FN595344
EMBL:FN595992	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	EntrezGene:LOC100243001	wikigene:LOC100243001	EntrezGene:LOC100260091
wikigene:LOC100260091	PFAM:PF13365	PRINTS:PR00834	PANTHER:PTHR43019	PANTHER:PTHR43019:SF3	InterPro:Peptidase_S1C
InterPro:Peptidase_S1_PA	MEROPS:S01.441	SUPFAM:SSF50494	UniParc:UPI0002109351	ArrayExpress:VIT_10s0003g03850	EnsemblPlantsGene:VIT_10s0003g03850
EnsemblPlants:VIT_10s0003g03850.t01	unigene:Vvi.26433	RefSeq:XP_002278272	RefSeq:XP_002278272.1	SEG:seg	:

Description

No Description!

Coordinates

chr10:+:6565337..6572387

Molecular Weight (calculated)

24863.4 Da

IEP (calculated)

6.787

GRAVY (calculated)

-0.132

Length

233 amino acids

Sequence
(BLAST)

001: MEDTSPSVVF IKDLEIVKSP TSSSNESMLN ENENTKVEGT GSGFIWDKFG HIVTNYHVVA KLATDTSGLQ RCKVYLVDAK GNSFSREAKI IGYDPAYDLA
101: VLKVDIEGNE LKPVVLGTSR DIRVGQSCFA IGNPYGYENT LTTGVVSGLG REIPSPNGKA IRGAIQTDAA INSGNSGGPL INSYGHVIGV NTATFTRKGT
201: GVSSGVNFAI PIDTVVRTVP YLIVYGTPYS NRY

Best Arabidopsis Sequence Match ( AT4G18370.1 )
(BLAST)

001: MTMALASSKA FSSIFNTLSP INQSKFVLAC SGSNHVDVID RRRRIMIFGS SLALTSSLLG SNQQRLPMES AIALEQFKEK EEELEEEEER NVNLFQKTSP
101: SVVYIEAIEL PKTSSGDILT DEENGKIEGT GSGFVWDKLG HIVTNYHVIA KLATDQFGLQ RCKVSLVDAK GTRFSKEGKI VGLDPDNDLA VLKIETEGRE
201: LNPVVLGTSN DLRVGQSCFA IGNPYGYENT LTIGVVSGLG REIPSPNGKS ISEAIQTDAD INSGNSGGPL LDSYGHTIGV NTATFTRKGS GMSSGVNFAI
301: PIDTVVRTVP YLIVYGTAYR DRF

Arabidopsis Description

DEGP5Protease Do-like 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SEL7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.