Factsheet for VIT_14s0108g00580.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	mitochondrion	70.64	75.9
KRH18481	Soybean	plastid	78.76	71.9
HORVU2Hr1G080310.2	Barley	extracellular	52.51	69.4
PGSC0003DMT400017849	Potato	plastid	75.42	68.7
Solyc02g067360.2.1	Tomato	plastid	75.89	68.39
AT5G39830.1	Thale cress	cytosol, plastid	73.03	68.3
Bra040850.1-P	Field mustard	plastid	72.55	67.41
CDX74425	Canola	plastid	72.55	67.41
CDY30272	Canola	plastid	72.31	67.33
Os04t0459900-01	Rice	plastid	70.17	66.07
EES10940	Sorghum	plastid	69.21	65.02
TraesCS2A01G339400.1	Wheat	plastid	66.59	62.7
TraesCS2D01G323700.1	Wheat	plastid	66.59	62.7
TraesCS2B01G342600.2	Wheat	plastid	66.11	62.25
Zm00001d003426_P002	Maize	plastid	68.5	59.05
VIT_00s1450g00010.t01	Wine grape	cytosol, peroxisome	19.81	51.88
VIT_10s0003g03850.t01	Wine grape	cytosol, peroxisome, plastid	25.3	45.49
VIT_18s0072g00970.t01	Wine grape	plastid	40.81	39.95
VIT_14s0060g02370.t01	Wine grape	mitochondrion	22.67	22.04
VIT_00s1463g00010.t01	Wine grape	plastid	6.21	19.7

Protein Annotations

EntrezGene:100249197	wikigene:100249197	MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.10	ProteinID:CCB47546
ProteinID:CCB47546.1	UniProt:F6H5S5	EMBL:FN595239	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0005488	GO:GO:0005515	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0019538	InterPro:IPR001478	EntrezGene:LOC100249197	wikigene:LOC100249197	InterPro:PDZ	InterPro:PDZ_sf
PFAM:PF13180	PFAM:PF13365	PRINTS:PR00834	PANTHER:PTHR43343	PANTHER:PTHR43343:SF3	InterPro:Peptidase_S1C
InterPro:Peptidase_S1_PA	MEROPS:S01.474	SUPFAM:SSF50156	SUPFAM:SSF50494	UniParc:UPI0001984BF4	ArrayExpress:VIT_14s0108g00580
EnsemblPlantsGene:VIT_14s0108g00580	EnsemblPlants:VIT_14s0108g00580.t01	unigene:Vvi.12273	RefSeq:XP_002278099	RefSeq:XP_002278099.2	SEG:seg

Description

No Description!

Coordinates

chr14:+:29315827..29331080

Molecular Weight (calculated)

44769.9 Da

IEP (calculated)

6.377

GRAVY (calculated)

0.079

Length

419 amino acids

Sequence
(BLAST)

001: MGLANLSFLD FVDGFYRPVD DQTKDLGVVI RKNIPLTTRR TLFASLLMYS WYHPSRYLSA HALGDPSVTI EEVTPPVSPS GPLFPTEERI VQLFERNTYS
101: VVNIFDVTLR PQLNVTGAVE VPEGNGSGVV WDEQGHIVTN YHVIGNALSR NSKPGQVVAR VNILASDGVQ KNFEGKLIGA DRTKDLAVLK IEASEDLLRP
201: MKVGQSSYLR VGQQCLAIGN PFGFDHTLTV GVISGLNRDI FSQTGVTIGG GIQTDAAINP GNSGGPLLDS KGNLIGINTA IFTQTGTSAG VGFAIPSSTV
301: LKIVPQLIQY GKVVRAGLNA DIAPDLVANQ LNVRNGALVL LVPGDSLAAK AGLLPTTRGF AGNIMLGDII VAVDNKPVRS KAELYKALDD YNVGDKVLFK
401: IQRGADILEL PIVLEEKSS

Best Arabidopsis Sequence Match ( AT5G39830.1 )
(BLAST)

001: MQVIASFCSK PNENEFVGRR QLLSSVCSKI SQGDVVSHPP VSSVKVTQDW KSNLHELAVK SVPSTTRRIL LTSLFMNLCF NPSRYLSALA LGDPSVATVE
101: DVSPTVFPAG PLFPTEGRIV QLFEKNTYSV VNIFDVTLRP QLKMTGVVEI PEGNGSGVVW DGQGYIVTNY HVIGNALSRN PSPGDVVGRV NILASDGVQK
201: NFEGKLVGAD RAKDLAVLKV DAPETLLKPI KVGQSNSLKV GQQCLAIGNP FGFDHTLTVG VISGLNRDIF SQTGVTIGGG IQTDAAINPG NSGGPLLDSK
301: GNLIGINTAI FTQTGTSAGV GFAIPSSTVL KIVPQLIQFS KVLRAGINIE LAPDPVANQL NVRNGALVLQ VPGKSLAEKA GLHPTSRGFA GNIVLGDIIV
401: AVDDKPVKNK AELMKILDEY SVGDKVTLKI KRGNEDLELK ISLEEKSS

Arabidopsis Description

DEGP8Protease Do-like 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU10]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.