Factsheet for Solyc02g067360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
vacuole 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017849	Potato	plastid	81.72	82.61
GSMUA_Achr10P...	Banana	mitochondrion	64.3	76.67
VIT_14s0108g00580.t01	Wine grape	cytosol	68.39	75.89
HORVU2Hr1G080310.2	Barley	extracellular	48.17	70.66
KRH18481	Soybean	plastid	67.96	68.85
AT5G39830.1	Thale cress	cytosol, plastid	66.24	68.75
Bra040850.1-P	Field mustard	plastid	65.16	67.18
CDX74425	Canola	plastid	65.16	67.18
CDY30272	Canola	plastid	64.73	66.89
Os04t0459900-01	Rice	plastid	62.37	65.17
EES10940	Sorghum	plastid	62.15	64.8
TraesCS2A01G339400.1	Wheat	plastid	61.94	64.72
TraesCS2D01G323700.1	Wheat	plastid	61.94	64.72
TraesCS2B01G342600.2	Wheat	plastid	61.51	64.27
Zm00001d003426_P002	Maize	plastid	61.94	59.26
Solyc08g048550.2.1	Tomato	plastid	26.02	39.54
Solyc02g086830.2.1	Tomato	plastid	36.56	39.53

Protein Annotations

MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0005488	GO:GO:0005515	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0019538	InterPro:IPR001478	UniProt:K4B768	InterPro:PDZ	InterPro:PDZ_sf	PFAM:PF13180
PFAM:PF13365	PRINTS:PR00834	PANTHER:PTHR43343	PANTHER:PTHR43343:SF3	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA
MEROPS:S01.474	SMART:SM00228	SUPFAM:SSF50156	SUPFAM:SSF50494	EnsemblPlantsGene:Solyc02g067360.2	EnsemblPlants:Solyc02g067360.2.1
UniParc:UPI00027691CE	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:-:37557860..37562901

Molecular Weight (calculated)

49557.6 Da

IEP (calculated)

6.520

GRAVY (calculated)

0.064

Length

465 amino acids

Sequence
(BLAST)

001: MEVIIVSSNA KTPIHLHTNQ PQPPILNNSV FLGRRELCFD SISTVCSADP ITSNPSTSVS APRGGGDNGN SLIEQLRRSF PFATRRMLLT SFFMYSCYHP
101: SRYLSALALG DPSVTVEQVT PTIFPSAALF PLEERVVELF EKNTYCVVNI FDVTLRPTLN VTGMVEIPEG NGSGVIWDKE GHIVTNYHVI GNSLSRNPSR
201: GQVVARVNIL AADGVQKNFE GILIGADRAK DLAVLKVGAS EDLLRPIRVG ESSSLRVGQQ CLAIGNPFGF DHTLTVGVIS GLNRDIYSQT GVTIGGGIQT
301: DAAINPGNSG GPLLDSKGNL IGINTAIFTQ TGTSAGVGFA IPSSTVLRVV PQLIQSGKVL RAGLNIEIAP DLIANQLNVR NGALVLLVPG NSPAAKAGLL
401: PTTRGFAGNI VLGDIIEAVD DKPVKSKADL YKILDNYNIG DEVRLKIRRG NDNLELIIAL EEKDS

Best Arabidopsis Sequence Match ( AT5G39830.1 )
(BLAST)

001: MQVIASFCSK PNENEFVGRR QLLSSVCSKI SQGDVVSHPP VSSVKVTQDW KSNLHELAVK SVPSTTRRIL LTSLFMNLCF NPSRYLSALA LGDPSVATVE
101: DVSPTVFPAG PLFPTEGRIV QLFEKNTYSV VNIFDVTLRP QLKMTGVVEI PEGNGSGVVW DGQGYIVTNY HVIGNALSRN PSPGDVVGRV NILASDGVQK
201: NFEGKLVGAD RAKDLAVLKV DAPETLLKPI KVGQSNSLKV GQQCLAIGNP FGFDHTLTVG VISGLNRDIF SQTGVTIGGG IQTDAAINPG NSGGPLLDSK
301: GNLIGINTAI FTQTGTSAGV GFAIPSSTVL KIVPQLIQFS KVLRAGINIE LAPDPVANQL NVRNGALVLQ VPGKSLAEKA GLHPTSRGFA GNIVLGDIIV
401: AVDDKPVKNK AELMKILDEY SVGDKVTLKI KRGNEDLELK ISLEEKSS

Arabidopsis Description

DEGP8Protease Do-like 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU10]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.