CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0108g00580.t01	Wine grape	cytosol	71.9	78.76
GSMUA_Achr10P...	Banana	mitochondrion	65.36	76.92
HORVU2Hr1G080310.2	Barley	extracellular	50.11	72.56
AT5G39830.1	Thale cress	cytosol, plastid	67.32	68.97
Os04t0459900-01	Rice	plastid	66.67	68.76
EES10940	Sorghum	plastid	66.67	68.61
TraesCS2A01G339400.1	Wheat	plastid	66.23	68.31
PGSC0003DMT400017849	Potato	plastid	68.19	68.04
Solyc02g067360.2.1	Tomato	plastid	68.85	67.96
TraesCS2D01G323700.1	Wheat	plastid	65.8	67.87
Bra040850.1-P	Field mustard	plastid	66.67	67.85
CDX74425	Canola	plastid	66.67	67.85
TraesCS2B01G342600.2	Wheat	plastid	65.58	67.64
CDY30272	Canola	plastid	65.8	67.11
Zm00001d003426_P002	Maize	plastid	65.36	61.73
KRG93298	Soybean	nucleus, plastid	39.87	42.46
KRH56605	Soybean	plastid	39.22	42.25
KRH21081	Soybean	plastid	25.71	38.82
KRH11171	Soybean	plastid	23.09	37.72
KRG96820	Soybean	mitochondrion	22.22	23.89

Protein Annotations

EntrezGene:100804040	MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.10	UniProt:A0A0R0GJ52	EMBL:ACUP02008076
EnsemblPlantsGene:GLYMA_13G063400	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005488	GO:GO:0005515
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	InterPro:IPR001478
EnsemblPlants:KRH18481	ProteinID:KRH18481	ProteinID:KRH18481.1	InterPro:PDZ	InterPro:PDZ_sf	PFAM:PF13180
PFAM:PF13365	PRINTS:PR00834	PANTHER:PTHR43343	PANTHER:PTHR43343:SF3	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA
SMART:SM00228	SUPFAM:SSF50156	SUPFAM:SSF50494	UniParc:UPI0003DE9CF9	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:-:16188382..16194191

Molecular Weight (calculated)

48606.8 Da

IEP (calculated)

7.426

GRAVY (calculated)

0.178

Length

459 amino acids

Sequence
(BLAST)

001: MQVLLSSCNL WSLGVPTHSH RGRRSSVLSR REICFDGMSS VCSNDAVSPI SISSSTVQVQ DETLDFGAML RKIVLSPTRR VLVVSLTMYS CLCSSRFLSA
101: LALGDPSVKL EEVTPPVFSS GPLFPIEDRI VQLFERNTYS VVNIFDVTLR PQLNVTGVVE IPEGNGSGVV WDEEGHIVTN YHVIGNALSR NPNSGEVVAR
201: VNILASEGLQ KNFEGRLIGA DRLKDLAVLK VEAPKDILRP IKVGQSSSLK VGQQCLAIGN PFGFDHTLTV GVISGLNRDI SSQTGVTIGG GVQTDAAINP
301: GNSGGPLLDS KGSLIGINTA IFTRTGTSAG VGFAIPSSTV LRIVPQLIQF GKVVRAGLNV DIAPDLIANQ LNVRNGALVL LVPANSLAAK AGLNPTTRGF
401: AGNIVLGDII VAVDNKPVKS KADLLKALDD YNVGDKVVLM IQRGSEKLEL PVALEEQSS

Best Arabidopsis Sequence Match ( AT5G39830.1 )
(BLAST)

001: MQVIASFCSK PNENEFVGRR QLLSSVCSKI SQGDVVSHPP VSSVKVTQDW KSNLHELAVK SVPSTTRRIL LTSLFMNLCF NPSRYLSALA LGDPSVATVE
101: DVSPTVFPAG PLFPTEGRIV QLFEKNTYSV VNIFDVTLRP QLKMTGVVEI PEGNGSGVVW DGQGYIVTNY HVIGNALSRN PSPGDVVGRV NILASDGVQK
201: NFEGKLVGAD RAKDLAVLKV DAPETLLKPI KVGQSNSLKV GQQCLAIGNP FGFDHTLTVG VISGLNRDIF SQTGVTIGGG IQTDAAINPG NSGGPLLDSK
301: GNLIGINTAI FTQTGTSAGV GFAIPSSTVL KIVPQLIQFS KVLRAGINIE LAPDPVANQL NVRNGALVLQ VPGKSLAEKA GLHPTSRGFA GNIVLGDIIV
401: AVDDKPVKNK AELMKILDEY SVGDKVTLKI KRGNEDLELK ISLEEKSS

Arabidopsis Description

DEGP8Protease Do-like 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU10]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.