CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93298	Soybean	nucleus, plastid	84.04	83.06
HORVU1Hr1G089820.2	Barley	plastid	70.19	78.48
VIT_18s0072g00970.t01	Wine grape	plastid	77.46	77.1
Solyc02g086830.2.1	Tomato	plastid	76.29	75.58
CDY58511	Canola	plastid	75.82	74.25
Bra025312.1-P	Field mustard	plastid	75.82	73.74
CDX86460	Canola	plastid	75.82	73.74
PGSC0003DMT400001298	Potato	plastid	73.71	73.02
OQU78439	Sorghum	plastid	73.94	72.75
AT3G27925.1	Thale cress	plastid	74.18	71.98
Os05t0568900-01	Rice	plastid	73.71	71.85
GSMUA_Achr1P13970_001	Banana	plastid	74.88	71.69
TraesCS1B01G437600.1	Wheat	plastid	70.89	70.89
TraesCS1A01G408900.1	Wheat	plastid	61.03	70.84
TraesCS1D01G416000.1	Wheat	plastid	71.13	70.63
Zm00001d009613_P001	Maize	plastid	73.0	67.46
Zm00001d039059_P001	Maize	plastid	73.24	64.86
HORVU3Hr1G101230.2	Barley	plastid	39.67	56.52
Zm00001d020604_P001	Maize	plastid	26.76	45.24
KRH18481	Soybean	plastid	42.25	39.22
KRH21081	Soybean	plastid	27.0	37.83
KRH11171	Soybean	plastid	24.65	37.37
KRG96820	Soybean	mitochondrion	23.94	23.89

Protein Annotations

EntrezGene:100783877	MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.10	EMBL:ACUP02002787	EnsemblPlantsGene:GLYMA_05G007200
GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005488	GO:GO:0005515	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	UniProt:I1K1G2	InterPro:IPR001478
EnsemblPlants:KRH56605	ProteinID:KRH56605	ProteinID:KRH56605.1	InterPro:PDZ	InterPro:PDZ_sf	PFAM:PF13180
PFAM:PF13365	PRINTS:PR00834	PFscan:PS50106	PANTHER:PTHR43343	PANTHER:PTHR43343:SF3	InterPro:Peptidase_S1C
InterPro:Peptidase_S1_PA	MEROPS:S01.472	SMART:SM00228	SUPFAM:SSF50156	SUPFAM:SSF50494	UniParc:UPI0002339DF1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:691720..697359

Molecular Weight (calculated)

45208.5 Da

IEP (calculated)

6.800

GRAVY (calculated)

0.118

Length

426 amino acids

Sequence
(BLAST)

001: MATFSLISTL FPSSSSSFSR SSSYTTKPTT IHLSKSLHLY TPTLFLLRPP NPTLPIIPLF PKLTIPKSLL LLCTSLALSF TLLLSDADSA AAFVVTSPRK
101: LQSDELATVR LFQENTPSVV YITNLAVKQD AFTLDVLEVP QGSGSGFVWD KEGHIVTNYH VIRGASDLKV TLADQSTLDA IVVGFDQDKD VAVLRVDAPK
201: DKLRPIPIGV SADLLVGQKV YAIGNPFGLD HTLTTGVISG LRREISSAAT GRPIQDVIQT DAAINPGNSG GPLLDSSGNL IGINTAIYSP SGASSGVGFS
301: IPVDTVSGIV DQLVKFGKVT RPILGIKFAP DQSVEQLGVS GVLVLDAPAN GPAGKAGLQS TKRDSYGRLI LGDIITSVND KKVTNGSDLY RILDQCKVGD
401: KLIVEVLRGD HKEKIPVILE PKPDES

Best Arabidopsis Sequence Match ( AT3G27925.1 )
(BLAST)

001: MATTTSCSLL LSSTLFLHSP PSSHLSFFNL SSSRSSPISL YPIRSKRYFR ILSKLSLNDN NRDDDDDTLH FTPFSAVKPF FLLCTSVALS FSLFAASPAV
101: ESASAFVVST PKKLQTDELA TVRLFQENTP SVVYITNLAV RQDAFTLDVL EVPQGSGSGF VWDKQGHIVT NYHVIRGASD LRVTLADQTT FDAKVVGFDQ
201: DKDVAVLRID APKNKLRPIP VGVSADLLVG QKVFAIGNPF GLDHTLTTGV ISGLRREISS AATGRPIQDV IQTDAAINPG NSGGPLLDSS GTLIGINTAI
301: YSPSGASSGV GFSIPVDTVG GIVDQLVRFG KVTRPILGIK FAPDQSVEQL GVSGVLVLDA PPSGPAGKAG LQSTKRDGYG RLVLGDIITS VNGTKVSNGS
401: DLYRILDQCK VGDEVTVEVL RGDHKEKISV TLEPKPDES

Arabidopsis Description

DEGP1DEGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V823]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.