Factsheet for Solyc02g086830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001298	Potato	plastid	91.86	91.86
HORVU1Hr1G089820.2	Barley	plastid	68.6	77.43
KRH56605	Soybean	plastid	75.58	76.29
VIT_18s0072g00970.t01	Wine grape	plastid	74.19	74.53
KRG93298	Soybean	nucleus, plastid	73.02	72.85
CDY58511	Canola	plastid	73.49	72.64
Bra025312.1-P	Field mustard	plastid	72.79	71.46
CDX86460	Canola	plastid	72.79	71.46
AT3G27925.1	Thale cress	plastid	72.56	71.07
OQU78439	Sorghum	plastid	71.4	70.9
Os05t0568900-01	Rice	plastid	71.86	70.71
TraesCS1B01G437600.1	Wheat	plastid	69.3	69.95
GSMUA_Achr1P13970_001	Banana	plastid	72.09	69.66
TraesCS1D01G416000.1	Wheat	plastid	69.3	69.46
TraesCS1A01G408900.1	Wheat	plastid	58.84	68.94
Zm00001d009613_P001	Maize	plastid	71.4	66.59
Zm00001d039059_P001	Maize	plastid	71.4	63.83
HORVU3Hr1G101230.2	Barley	plastid	39.53	56.86
Zm00001d020604_P001	Maize	plastid	24.65	42.06
Solyc08g048550.2.1	Tomato	plastid	26.05	36.6
Solyc02g067360.2.1	Tomato	plastid	39.53	36.56

Protein Annotations

MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006091	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008236
GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009719
GO:GO:0009735	GO:GO:0009987	GO:GO:0010206	GO:GO:0015979	GO:GO:0016020	GO:GO:0016787
GO:GO:0019538	GO:GO:0031977	GO:GO:0042802	InterPro:IPR001478	UniProt:K4BBJ0	InterPro:PDZ
InterPro:PDZ_sf	PFAM:PF13180	PFAM:PF13365	PRINTS:PR00834	PFscan:PS50106	PANTHER:PTHR43343
PANTHER:PTHR43343:SF3	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA	SMART:SM00228	SUPFAM:SSF50156	SUPFAM:SSF50494
EnsemblPlantsGene:Solyc02g086830.2	EnsemblPlants:Solyc02g086830.2.1	UniParc:UPI0002767B5A	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:+:49440114..49444280

Molecular Weight (calculated)

45564.5 Da

IEP (calculated)

7.369

GRAVY (calculated)

0.019

Length

430 amino acids

Sequence
(BLAST)

001: MAASSHSLAS SACFSTTPAR KFSGSDRFQL AKSLLCRKIP GFSGSVVCAR RICSNYASSG DQSNYGKKLM DSIFVACTSV ALSFSLYIAD VDPASAFVVT
101: SPRKLQTDEL ATVRLFQENT PSVVYITNLA SRQDMFTLDV FEVPQGSGSG FVWDKNGNIV TNYHVIRGAS DLRVTLADQT TYDAKVVGFD QDKDVAVLHI
201: DAPKDKLRPI PIGVSADLLV GQKVFAIGNP FGLDHTLTTG VISGLRREIN SAATGRPIQD VIQTDAAINP GNSGGPLLDS SGNLIGINTA IYSPSGASSG
301: VGFSIPVDTV SGIVDQLVQF GKVTRPILGI KFAPDQSVEQ LGVTGVLVLD APPNGPAGKA GLLPTKRDSY GRLILGDIIT SINGKKVSNG TDLYRILDQC
401: KVGEKVIVEV LRGDQKEKIP VLLEPKPEES

Best Arabidopsis Sequence Match ( AT3G27925.1 )
(BLAST)

001: MATTTSCSLL LSSTLFLHSP PSSHLSFFNL SSSRSSPISL YPIRSKRYFR ILSKLSLNDN NRDDDDDTLH FTPFSAVKPF FLLCTSVALS FSLFAASPAV
101: ESASAFVVST PKKLQTDELA TVRLFQENTP SVVYITNLAV RQDAFTLDVL EVPQGSGSGF VWDKQGHIVT NYHVIRGASD LRVTLADQTT FDAKVVGFDQ
201: DKDVAVLRID APKNKLRPIP VGVSADLLVG QKVFAIGNPF GLDHTLTTGV ISGLRREISS AATGRPIQDV IQTDAAINPG NSGGPLLDSS GTLIGINTAI
301: YSPSGASSGV GFSIPVDTVG GIVDQLVRFG KVTRPILGIK FAPDQSVEQL GVSGVLVLDA PPSGPAGKAG LQSTKRDGYG RLVLGDIITS VNGTKVSNGS
401: DLYRILDQCK VGDEVTVEVL RGDHKEKISV TLEPKPDES

Arabidopsis Description

DEGP1DEGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V823]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.