Factsheet for Solyc08g048550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
vacuole 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076806	Potato	plastid	85.95	87.09
VIT_00s1450g00010.t01	Wine grape	cytosol, peroxisome	41.18	78.75
KRH21081	Soybean	plastid	62.42	62.83
KRH11171	Soybean	plastid	55.56	60.5
CDX99473	Canola	plastid	59.48	57.96
Bra013300.1-P	Field mustard	plastid	59.48	57.59
CDX78844	Canola	plastid	59.48	57.59
AT4G18370.1	Thale cress	plastid	59.48	56.35
EES16390	Sorghum	plastid	54.9	54.55
Zm00001d000230_P002	Maize	plastid	53.59	53.07
TraesCS5B01G030700.1	Wheat	mitochondrion, plastid, vacuole	52.61	52.44
TraesCS5D01G039300.1	Wheat	mitochondrion	52.94	52.09
TraesCS5A01G031100.1	Wheat	mitochondrion	51.96	51.62
HORVU5Hr1G008160.5	Barley	mitochondrion	52.29	47.62
Os12t0616600-01	Rice	plastid, vacuole	15.36	30.13
Solyc02g086830.2.1	Tomato	plastid	36.6	26.05
Solyc02g067360.2.1	Tomato	plastid	39.54	26.02

Protein Annotations

MapMan:19.4.2.3	Gene3D:2.40.10.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009543	GO:GO:0009579	GO:GO:0009987
GO:GO:0010206	GO:GO:0015979	GO:GO:0016787	GO:GO:0019538	GO:GO:0031977	UniProt:K4CKK5
PFAM:PF13365	PRINTS:PR00834	PANTHER:PTHR43019	PANTHER:PTHR43019:SF3	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA
MEROPS:S01.441	SUPFAM:SSF50494	EnsemblPlantsGene:Solyc08g048550.2	EnsemblPlants:Solyc08g048550.2.1	UniParc:UPI000276C876	:

Description

Protease Do-like 5, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G18370) UniProtKB/Swiss-Prot;Acc:Q9SEL7]

Coordinates

chr8:+:12220538..12226807

Molecular Weight (calculated)

32717.2 Da

IEP (calculated)

7.576

GRAVY (calculated)

0.028

Length

306 amino acids

Sequence
(BLAST)

001: MVVLGVVCPQ PQHIVVSIRT QIPPISTQTQ YCTRRKALIF TSSMISSFIY TSHHSPATAF QIEMPQQEED RLVHLFQDTS PSVVFIKDLE LAKGSNDSTK
101: VLADDDNAKV EGTGSGFIWD KFGHIVTNYH VITKLATDNI GLQRCKVSLV NTKGESIVKD AKIVGVDPAY DLAVLKVDVE GVEVKPVSVG TSRGLRVGQS
201: CFAIGNPYGF ENTLTTGVVS GLGREIPAPN GAAIKGAIQT DAAINAGNSG GPLIDSSGHV IGLNTATFTR RGSGMSSGVN FAIPIDTVVR TIPYLIVYGT
301: SYKDRY

Best Arabidopsis Sequence Match ( AT4G18370.1 )
(BLAST)

001: MTMALASSKA FSSIFNTLSP INQSKFVLAC SGSNHVDVID RRRRIMIFGS SLALTSSLLG SNQQRLPMES AIALEQFKEK EEELEEEEER NVNLFQKTSP
101: SVVYIEAIEL PKTSSGDILT DEENGKIEGT GSGFVWDKLG HIVTNYHVIA KLATDQFGLQ RCKVSLVDAK GTRFSKEGKI VGLDPDNDLA VLKIETEGRE
201: LNPVVLGTSN DLRVGQSCFA IGNPYGYENT LTIGVVSGLG REIPSPNGKS ISEAIQTDAD INSGNSGGPL LDSYGHTIGV NTATFTRKGS GMSSGVNFAI
301: PIDTVVRTVP YLIVYGTAYR DRF

Arabidopsis Description

DEGP5Protease Do-like 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SEL7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.