CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
vacuole 1
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000230_P002	Maize	plastid	79.87	79.61
TraesCS5B01G030700.1	Wheat	mitochondrion, plastid, vacuole	77.27	77.52
VIT_00s1450g00010.t01	Wine grape	cytosol, peroxisome	39.29	75.62
TraesCS5D01G039300.1	Wheat	mitochondrion	75.97	75.24
TraesCS5A01G031100.1	Wheat	mitochondrion	74.35	74.35
VIT_10s0003g03850.t01	Wine grape	cytosol, peroxisome, plastid	52.92	69.96
HORVU5Hr1G008160.5	Barley	mitochondrion	76.3	69.94
KRH21081	Soybean	plastid	59.42	60.2
KRH11171	Soybean	plastid	54.87	60.14
PGSC0003DMT400076806	Potato	plastid	56.17	57.28
Os12t0616600-01	Rice	plastid, vacuole	28.25	55.77
Solyc08g048550.2.1	Tomato	plastid	54.55	54.9
CDX78844	Canola	plastid	53.57	52.22
AT4G18370.1	Thale cress	plastid	54.55	52.01
CDX99473	Canola	plastid	52.92	51.91
Bra013300.1-P	Field mustard	plastid	53.25	51.9
VIT_00s1463g00010.t01	Wine grape	plastid	13.96	32.58
OQU78439	Sorghum	plastid	41.23	29.33
EES10940	Sorghum	plastid	40.91	28.25
OQU83155	Sorghum	mitochondrion	25.65	18.46

Protein Annotations

MapMan:19.4.2.3	Gene3D:2.40.10.10	EntrezGene:8071476	UniProt:C5YSC3	EnsemblPlants:EES16390	ProteinID:EES16390
ProteinID:EES16390.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009543	GO:GO:0009579	GO:GO:0009987	GO:GO:0010206
GO:GO:0015979	GO:GO:0016787	GO:GO:0019538	GO:GO:0031977	PFAM:PF13365	PRINTS:PR00834
PANTHER:PTHR43019	PANTHER:PTHR43019:SF3	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA	EnsemblPlantsGene:SORBI_3008G172700	SUPFAM:SSF50494
UniParc:UPI0001A88187	RefSeq:XP_002442552.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:60629181..60634709

Molecular Weight (calculated)

31748.4 Da

IEP (calculated)

6.248

GRAVY (calculated)

-0.118

Length

308 amino acids

Sequence
(BLAST)

001: MALRPLLRLL LPSPPHRNPP PPPSSPPVAS TSRRAAAAAV LLLSAAASAP PSRSARAEPE GEDVDEARVV RLFQEASPSV VFIKDLVVAG PQGRGGGGEE
101: DDDEGEGGGA KVEGTGSGFV WDSAGHIVTN YHVVAKLAGD GSASHRCKVF LEDSSGKSYS KEGRLIGCDP AYDLAVLKID VDSDQLRPAL IGTSRSLQVG
201: QSCFAIGNPY GYEHTLTTGV ISGLGREIPS PNGRAIRGAI QTDAAINAGN SGGPLIDSYG HVIGVNTATF TRKGSGISSG VNFAIPIDTV VQSVPNLIVY
301: GTSVSNRF

Best Arabidopsis Sequence Match ( AT4G18370.1 )
(BLAST)

001: MTMALASSKA FSSIFNTLSP INQSKFVLAC SGSNHVDVID RRRRIMIFGS SLALTSSLLG SNQQRLPMES AIALEQFKEK EEELEEEEER NVNLFQKTSP
101: SVVYIEAIEL PKTSSGDILT DEENGKIEGT GSGFVWDKLG HIVTNYHVIA KLATDQFGLQ RCKVSLVDAK GTRFSKEGKI VGLDPDNDLA VLKIETEGRE
201: LNPVVLGTSN DLRVGQSCFA IGNPYGYENT LTIGVVSGLG REIPSPNGKS ISEAIQTDAD INSGNSGGPL LDSYGHTIGV NTATFTRKGS GMSSGVNFAI
301: PIDTVVRTVP YLIVYGTAYR DRF

Arabidopsis Description

DEGP5Protease Do-like 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SEL7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.