CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G080310.2	Barley	extracellular	58.3	82.02
Zm00001d003426_P002	Maize	plastid	87.44	80.25
Os04t0459900-01	Rice	plastid	80.04	80.22
TraesCS2A01G339400.1	Wheat	plastid	79.15	79.33
TraesCS2D01G323700.1	Wheat	plastid	78.92	79.1
TraesCS2B01G342600.2	Wheat	plastid	78.48	78.65
GSMUA_Achr10P...	Banana	mitochondrion	64.57	73.85
VIT_14s0108g00580.t01	Wine grape	cytosol	65.02	69.21
KRH18481	Soybean	plastid	68.61	66.67
AT5G39830.1	Thale cress	cytosol, plastid	65.92	65.62
Bra040850.1-P	Field mustard	plastid	65.25	64.52
CDX74425	Canola	plastid	65.25	64.52
CDY30272	Canola	plastid	64.35	63.78
Solyc02g067360.2.1	Tomato	plastid	64.8	62.15
PGSC0003DMT400017849	Potato	plastid	63.9	61.96
EES16390	Sorghum	plastid	28.25	40.91
OQU78439	Sorghum	plastid	38.34	39.49
OQU83155	Sorghum	mitochondrion	24.89	25.93

Protein Annotations

MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.10	EntrezGene:8057473	UniProt:C5Y9U2	EnsemblPlants:EES10940
ProteinID:EES10940	ProteinID:EES10940.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009507	GO:GO:0009534
GO:GO:0009536	GO:GO:0009543	GO:GO:0009579	GO:GO:0009987	GO:GO:0010206	GO:GO:0015979
GO:GO:0016787	GO:GO:0019538	GO:GO:0031977	InterPro:IPR001478	InterPro:PDZ	InterPro:PDZ_sf
PFAM:PF13180	PFAM:PF13365	PRINTS:PR00834	PFscan:PS50106	PANTHER:PTHR43343	PANTHER:PTHR43343:SF3
InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA	SMART:SM00228	EnsemblPlantsGene:SORBI_3006G106400	SUPFAM:SSF50156	SUPFAM:SSF50494
unigene:Sbi.11436	UniParc:UPI0001A86E79	RefSeq:XP_002446612.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:47619157..47625037

Molecular Weight (calculated)

46280.8 Da

IEP (calculated)

8.475

GRAVY (calculated)

0.136

Length

446 amino acids

Sequence
(BLAST)

001: MQCLPCGPST NAPAAHAAGR SVSRRRVVVD GVASATHDSD EAPSRSMRAT CDLGAMSSKA LLLVSKRKLI ALSAFCLSLH SSRYFPALAL GDTSVKIEDV
101: TPKIFPSGPL FPTEKRIAEL FETNTYSVVN IFDATLRPQL NVTGVVEIPE GNGSGVVWDD SGHIVTNYHV VGSALSKNPK PGDVVARVNI LAAEGIQKNF
201: EGKLVGADRA KDLAVLKVDA PTDLLKPIIV GQSSALRVGQ QCLAIGNPFG FDHTLTVGVI SGLNRDIFSQ AGVTIGGGIQ TDAAINPGNS GGPLLDSKGH
301: MIGINTAIFT QTGTSAGVGF AIPSSTVLKI APQLIQFGKV RRAGLNVDFA PDPIAYQLNV RNGALILKVP GGSAAAKAGL APTGRGFAGN IVLGDIIVAV
401: DGKPVKGKSD LLRVLDDYGV GDQVTLTIRR GSETLEATLP LEEANV

Best Arabidopsis Sequence Match ( AT5G39830.1 )
(BLAST)

001: MQVIASFCSK PNENEFVGRR QLLSSVCSKI SQGDVVSHPP VSSVKVTQDW KSNLHELAVK SVPSTTRRIL LTSLFMNLCF NPSRYLSALA LGDPSVATVE
101: DVSPTVFPAG PLFPTEGRIV QLFEKNTYSV VNIFDVTLRP QLKMTGVVEI PEGNGSGVVW DGQGYIVTNY HVIGNALSRN PSPGDVVGRV NILASDGVQK
201: NFEGKLVGAD RAKDLAVLKV DAPETLLKPI KVGQSNSLKV GQQCLAIGNP FGFDHTLTVG VISGLNRDIF SQTGVTIGGG IQTDAAINPG NSGGPLLDSK
301: GNLIGINTAI FTQTGTSAGV GFAIPSSTVL KIVPQLIQFS KVLRAGINIE LAPDPVANQL NVRNGALVLQ VPGKSLAEKA GLHPTSRGFA GNIVLGDIIV
401: AVDDKPVKNK AELMKILDEY SVGDKVTLKI KRGNEDLELK ISLEEKSS

Arabidopsis Description

DEGP8Protease Do-like 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU10]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.