Factsheet for Zm00001d003426_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10940	Sorghum	plastid	80.25	87.44
HORVU2Hr1G080310.2	Barley	extracellular	52.47	80.44
Os04t0459900-01	Rice	plastid	73.05	79.78
TraesCS2A01G339400.1	Wheat	plastid	70.78	77.3
TraesCS2D01G323700.1	Wheat	plastid	70.58	77.08
TraesCS2B01G342600.2	Wheat	plastid	70.37	76.85
GSMUA_Achr10P...	Banana	mitochondrion	58.85	73.33
VIT_14s0108g00580.t01	Wine grape	cytosol	59.05	68.5
KRH18481	Soybean	plastid	61.73	65.36
AT5G39830.1	Thale cress	cytosol, plastid	58.85	63.84
CDY30272	Canola	plastid	58.85	63.56
Bra040850.1-P	Field mustard	plastid	58.02	62.53
CDX74425	Canola	plastid	58.02	62.53
Solyc02g067360.2.1	Tomato	plastid	59.26	61.94
PGSC0003DMT400017849	Potato	plastid	57.61	60.87
Zm00001d000230_P002	Maize	plastid	25.93	40.78
Zm00001d009613_P001	Maize	plastid	34.16	36.01
Zm00001d039059_P001	Maize	plastid	33.74	34.1
Zm00001d049018_P001	Maize	mitochondrion	23.05	26.23
Zm00001d020604_P001	Maize	plastid	12.76	24.6

Protein Annotations

EntrezGene:100272554	MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.10	UniProt:A0A1D6E958	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536	GO:GO:0009543	GO:GO:0009579
GO:GO:0009987	GO:GO:0010206	GO:GO:0015979	GO:GO:0016787	GO:GO:0019538	GO:GO:0031977
InterPro:IPR001478	ProteinID:ONM16935.1	InterPro:PDZ	InterPro:PDZ_sf	PFAM:PF13180	PFAM:PF13365
PRINTS:PR00834	PFscan:PS50106	PANTHER:PTHR43343	PANTHER:PTHR43343:SF3	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA
SMART:SM00228	SUPFAM:SSF50156	SUPFAM:SSF50494	UniParc:UPI00084498BE	EnsemblPlantsGene:Zm00001d003426	EnsemblPlants:Zm00001d003426_P002
EnsemblPlants:Zm00001d003426_T002	SEG:seg	:	:	:	:

Description

Protease Do-like 8 chloroplastic

Coordinates

chr2:-:43975014..43982419

Molecular Weight (calculated)

51193.5 Da

IEP (calculated)

9.353

GRAVY (calculated)

0.005

Length

486 amino acids

Sequence
(BLAST)

001: MSNGNPSSSY PQTRLQLVHH TRTRILLRSS LWETRTTSDQ MQCLPCGPST NAPAAHAAAR SVSRRRVVVE GVTSATHDSE EAPPRSMRAT GDRGAMSSKT
101: LWLVSKRKLI ALSAFCLSLH SSRYFPAFAL GDTSVKIEDV TPKIFPSGPL FPTEKRIAEL FEINTYSVVN IFDATLRPQL NVTGVVEIPE GNGSGVVWDD
201: FGHIITNYHV VGSALSKNPK PGDVVARVNI LAAEGIQKNF EGKLVGADRA KDLAVLKVDA PTDLLKPINV GQSSALRVGQ QCLAIGNPFG FDHTLTVGVI
301: SGLNRDILSQ AGVTIGGGIQ TDAAINPGNS GGPLLDSKGH MIGINAAIFT QTGTSAGVGF AIPSSTVLKI APQLIQFGKV RRAGLNVDFA PDPIAYQLNV
401: RNGALILKVP GGSAAAKAGL APTSRGFAGN IVLGDIVVAV DGKPVKGKSD LLRVLDDYGV GDQVSLTIRR GSETLEATLP LEEADM

Best Arabidopsis Sequence Match ( AT5G39830.1 )
(BLAST)

001: MQVIASFCSK PNENEFVGRR QLLSSVCSKI SQGDVVSHPP VSSVKVTQDW KSNLHELAVK SVPSTTRRIL LTSLFMNLCF NPSRYLSALA LGDPSVATVE
101: DVSPTVFPAG PLFPTEGRIV QLFEKNTYSV VNIFDVTLRP QLKMTGVVEI PEGNGSGVVW DGQGYIVTNY HVIGNALSRN PSPGDVVGRV NILASDGVQK
201: NFEGKLVGAD RAKDLAVLKV DAPETLLKPI KVGQSNSLKV GQQCLAIGNP FGFDHTLTVG VISGLNRDIF SQTGVTIGGG IQTDAAINPG NSGGPLLDSK
301: GNLIGINTAI FTQTGTSAGV GFAIPSSTVL KIVPQLIQFS KVLRAGINIE LAPDPVANQL NVRNGALVLQ VPGKSLAEKA GLHPTSRGFA GNIVLGDIIV
401: AVDDKPVKNK AELMKILDEY SVGDKVTLKI KRGNEDLELK ISLEEKSS

Arabidopsis Description

DEGP8Protease Do-like 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU10]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.