CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040850.1-P	Field mustard	plastid	100.0	100.0
AT5G39830.1	Thale cress	cytosol, plastid	87.58	88.17
CDY30272	Canola	plastid	86.03	86.22
VIT_14s0108g00580.t01	Wine grape	cytosol	67.41	72.55
GSMUA_Achr10P...	Banana	mitochondrion	61.86	71.54
HORVU2Hr1G080310.2	Barley	extracellular	48.12	68.45
KRH18481	Soybean	plastid	67.85	66.67
PGSC0003DMT400017849	Potato	plastid	67.85	66.52
EES10940	Sorghum	plastid	64.52	65.25
Solyc02g067360.2.1	Tomato	plastid	67.18	65.16
Os04t0459900-01	Rice	plastid	62.75	63.6
TraesCS2A01G339400.1	Wheat	plastid	61.64	62.47
TraesCS2B01G342600.2	Wheat	plastid	61.64	62.47
TraesCS2D01G323700.1	Wheat	plastid	61.64	62.47
Zm00001d003426_P002	Maize	plastid	62.53	58.02
CDY58511	Canola	plastid	38.14	39.54
CDX86460	Canola	plastid	38.14	39.27
CDX99473	Canola	plastid	26.61	38.22
CDX78844	Canola	plastid	26.39	37.66
CDY65943	Canola	cytosol, extracellular, plastid	11.53	35.37
CDX80635	Canola	mitochondrion, plastid	22.84	24.12
CDX86147	Canola	plastid	22.84	23.46
CDY07792	Canola	mitochondrion	15.08	18.73

Protein Annotations

MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.10	GO:A0A078CC84	EnsemblPlants:CDX74425	ProteinID:CDX74425
ProteinID:CDX74425.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005488	GO:GO:0005515
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00114278001
InterPro:IPR001478	InterPro:PDZ	InterPro:PDZ_sf	PFAM:PF13180	PFAM:PF13365	PRINTS:PR00834
PANTHER:PTHR43343	PANTHER:PTHR43343:SF3	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA	SMART:SM00228	SUPFAM:SSF50156
SUPFAM:SSF50494	UniParc:UPI000253E96D	SEG:seg	:	:	:

Description

BnaA04g09640D

Coordinates

chrLK031801:-:160872..163830

Molecular Weight (calculated)

47812.6 Da

IEP (calculated)

7.835

GRAVY (calculated)

0.053

Length

451 amino acids

Sequence
(BLAST)

001: MQVIASCSLR PDAFTPSEND FVGRRQLLSS ACSRISQGDV VSDRPASSVK IGRDWKSSLN ELAMKSVPRR IWLTSVFMNL CCNPSRYLSA LALGDPSVAT
101: VEDVIPPVVF PAGPLFPTEG RIVQLFEKNT YSVVNIFDVT LRPQLKMTGV VEIPEGNGSG VVWDEQGYIV TNYHVIGNAL SRNPSPGDVV GRVNILASDG
201: VQKNFEGKLV GADRAKDLAV LKVEAPETLL KPIRVGQSNS LKVGQQCLAI GNPFGFDHTL TVGVISGLNR DIFSQTGVTI GGGIQTDAAI NPGNSGGPLL
301: DSKGNLIGIN TAIYTQTGTS AGVGFAIPSS TVLKIVPQLI QFSKVLRAGI NIELAPDQVA NQLNVRNGAL VLQVPGDSLA AKAGLRPTSR GFAGNIVLGD
401: IIVAVDDKPV KSKAELMKVL DEYSVGDKVK LAIKRGSDDL ELQISLEEKS S

Best Arabidopsis Sequence Match ( AT5G39830.1 )
(BLAST)

001: MQVIASFCSK PNENEFVGRR QLLSSVCSKI SQGDVVSHPP VSSVKVTQDW KSNLHELAVK SVPSTTRRIL LTSLFMNLCF NPSRYLSALA LGDPSVATVE
101: DVSPTVFPAG PLFPTEGRIV QLFEKNTYSV VNIFDVTLRP QLKMTGVVEI PEGNGSGVVW DGQGYIVTNY HVIGNALSRN PSPGDVVGRV NILASDGVQK
201: NFEGKLVGAD RAKDLAVLKV DAPETLLKPI KVGQSNSLKV GQQCLAIGNP FGFDHTLTVG VISGLNRDIF SQTGVTIGGG IQTDAAINPG NSGGPLLDSK
301: GNLIGINTAI FTQTGTSAGV GFAIPSSTVL KIVPQLIQFS KVLRAGINIE LAPDPVANQL NVRNGALVLQ VPGKSLAEKA GLHPTSRGFA GNIVLGDIIV
401: AVDDKPVKNK AELMKILDEY SVGDKVTLKI KRGNEDLELK ISLEEKSS

Arabidopsis Description

DEGP8Protease Do-like 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU10]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.