Factsheet for PGSC0003DMT400017849

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g067360.2.1	Tomato	plastid	82.61	81.72
GSMUA_Achr10P...	Banana	mitochondrion	64.35	75.9
VIT_14s0108g00580.t01	Wine grape	cytosol	68.7	75.42
HORVU2Hr1G080310.2	Barley	extracellular	48.04	69.72
KRH18481	Soybean	plastid	68.04	68.19
Bra040850.1-P	Field mustard	plastid	66.52	67.85
CDX74425	Canola	plastid	66.52	67.85
AT5G39830.1	Thale cress	cytosol, plastid	65.87	67.63
CDY30272	Canola	plastid	66.09	67.56
EES10940	Sorghum	plastid	61.96	63.9
Os04t0459900-01	Rice	plastid	61.74	63.82
TraesCS2A01G339400.1	Wheat	plastid	61.09	63.15
TraesCS2D01G323700.1	Wheat	plastid	61.09	63.15
TraesCS2B01G342600.2	Wheat	plastid	60.87	62.92
Zm00001d003426_P002	Maize	plastid	60.87	57.61
PGSC0003DMT400076806	Potato	plastid	26.52	40.4
PGSC0003DMT400001298	Potato	plastid	37.17	39.77

Protein Annotations

EntrezGene:102604649	MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004252	GO:GO:0005488	GO:GO:0005515	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0019538	InterPro:IPR001478	UniProt:M1A9K8	InterPro:PDZ	InterPro:PDZ_sf
PFAM:PF13180	PFAM:PF13365	EnsemblPlantsGene:PGSC0003DMG400006931	PGSC:PGSC0003DMG400006931	EnsemblPlants:PGSC0003DMT400017849	PRINTS:PR00834
PANTHER:PTHR43343	PANTHER:PTHR43343:SF3	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA	MEROPS:S01.279	MEROPS:S01.474
SMART:SM00228	SUPFAM:SSF50156	SUPFAM:SSF50494	UniParc:UPI000296E2BD	RefSeq:XP_006357113.1	SEG:seg

Description

Protease degQ [Source:PGSC_GENE;Acc:PGSC0003DMG400006931]

Coordinates

chr2:-:25864790..25870666

Molecular Weight (calculated)

49108.8 Da

IEP (calculated)

5.723

GRAVY (calculated)

0.019

Length

460 amino acids

Sequence
(BLAST)

001: MEVIIVSSNA KAPFHPHTNQ PAILNNSVFL GRRELCFDSI SSVCSADPIN SNPSTSPSTP RIGGDNGNSL IEQRFPFATR RMLLTSFFMY SLYHPSRYLS
101: ALALGDPSVT VEQVTPSTFP SAELFPSEER VVELFEKNTY CVVNIFDVTL RPTLNVTGMV EIPEGNGSGI IWDKEGHIVT NYHVIGNSLS RNPSRGQVVA
201: RVNILAADGV QKNFEGILIG ADRAKDLAVL KVEASEDLLR PIRVGESSSL RVGQQCLAIG NPFGFDHTLT VGVISGLNRD IYSQTGVTIG GGIQTDAAIN
301: PGNSGGPLLD SKGNLIGINT AIFTQTGTSA GVGFAIPSST VLRVVPQLIQ AGKVLRAGLN IEIAPDLIAN QLNVRNGALV LLVPGNSPAA KVGLLPTTRG
401: FAGNIVLGDI IEAVDDKPVR SKAELYKALD NYNIGDEVRL KIRRGNDNLE LSIALEEKDS

Best Arabidopsis Sequence Match ( AT5G39830.1 )
(BLAST)

001: MQVIASFCSK PNENEFVGRR QLLSSVCSKI SQGDVVSHPP VSSVKVTQDW KSNLHELAVK SVPSTTRRIL LTSLFMNLCF NPSRYLSALA LGDPSVATVE
101: DVSPTVFPAG PLFPTEGRIV QLFEKNTYSV VNIFDVTLRP QLKMTGVVEI PEGNGSGVVW DGQGYIVTNY HVIGNALSRN PSPGDVVGRV NILASDGVQK
201: NFEGKLVGAD RAKDLAVLKV DAPETLLKPI KVGQSNSLKV GQQCLAIGNP FGFDHTLTVG VISGLNRDIF SQTGVTIGGG IQTDAAINPG NSGGPLLDSK
301: GNLIGINTAI FTQTGTSAGV GFAIPSSTVL KIVPQLIQFS KVLRAGINIE LAPDPVANQL NVRNGALVLQ VPGKSLAEKA GLHPTSRGFA GNIVLGDIIV
401: AVDDKPVKNK AELMKILDEY SVGDKVTLKI KRGNEDLELK ISLEEKSS

Arabidopsis Description

DEGP8Protease Do-like 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU10]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.