Factsheet for PGSC0003DMT400001298

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g086830.2.1	Tomato	plastid	91.86	91.86
HORVU1Hr1G089820.2	Barley	plastid	69.3	78.22
KRH56605	Soybean	plastid	73.02	73.71
VIT_18s0072g00970.t01	Wine grape	plastid	71.63	71.96
Bra025312.1-P	Field mustard	plastid	73.26	71.92
CDX86460	Canola	plastid	73.26	71.92
Os05t0568900-01	Rice	plastid	72.56	71.4
KRG93298	Soybean	nucleus, plastid	71.4	71.23
AT3G27925.1	Thale cress	plastid	72.56	71.07
TraesCS1B01G437600.1	Wheat	plastid	70.0	70.66
OQU78439	Sorghum	plastid	70.93	70.44
CDY58511	Canola	plastid	71.16	70.34
TraesCS1D01G416000.1	Wheat	plastid	70.0	70.16
GSMUA_Achr1P13970_001	Banana	plastid	71.86	69.44
TraesCS1A01G408900.1	Wheat	plastid	58.37	68.39
Zm00001d009613_P001	Maize	plastid	70.0	65.29
Zm00001d039059_P001	Maize	plastid	69.53	62.16
HORVU3Hr1G101230.2	Barley	plastid	38.37	55.18
Zm00001d020604_P001	Maize	plastid	23.72	40.48
PGSC0003DMT400076806	Potato	plastid	26.28	37.42
PGSC0003DMT400017849	Potato	plastid	39.77	37.17

Protein Annotations

EntrezGene:102591161	MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004252	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006091	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008236	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009719	GO:GO:0009735	GO:GO:0009987	GO:GO:0010206	GO:GO:0015979	GO:GO:0016020
GO:GO:0016787	GO:GO:0019538	GO:GO:0031977	GO:GO:0042802	InterPro:IPR001478	UniProt:M0ZI96
InterPro:PDZ	InterPro:PDZ_sf	PFAM:PF13180	PFAM:PF13365	EnsemblPlantsGene:PGSC0003DMG400000494	PGSC:PGSC0003DMG400000494
EnsemblPlants:PGSC0003DMT400001298	PRINTS:PR00834	PFscan:PS50106	PANTHER:PTHR43343	PANTHER:PTHR43343:SF3	InterPro:Peptidase_S1C
InterPro:Peptidase_S1_PA	SMART:SM00228	SUPFAM:SSF50156	SUPFAM:SSF50494	UniParc:UPI000296540A	RefSeq:XP_006338559.1
SEG:seg	:	:	:	:	:

Description

Serine-type peptidase [Source:PGSC_GENE;Acc:PGSC0003DMG400000494]

Coordinates

chr2:-:47042163..47046173

Molecular Weight (calculated)

45673.6 Da

IEP (calculated)

6.906

GRAVY (calculated)

0.009

Length

430 amino acids

Sequence
(BLAST)

001: MAASSHSLAS SACFSTTPTR KISGSDRFQL AKSILCRKIP GFAGSVVCAR RICSNYASSD DQSNYRKNLM DSIFVACTSV ALSFSLYIAD VDPASAFVVT
101: SPRKLQTDEL ATVRLFQENT PSVVYITNLA SRQDMFTLDV FEVPQGSGSG FVWDKNGNIV TNYHVIRGAS DLRVTLADQT TYDAKVVGFD QDKDVAVLHI
201: DAPKDKLRPI PIGVSADLLV GQKVFAIGNP FGLDHTLTTG VISGLRREIN SAATGRPIQD VIQTDAAINP GNSGGPLLDS SGNLIGINTA IYSPSGASSG
301: VGFSIPVDTV SGIVDQLVQF GKVTRPILGI KFAPDQSVEQ LGVTGVLVLD APPNGPAGKA GLLPTKRDSY GRLILGDIIT SINGKKVSNG TDLYRILDQC
401: KVGDKVIVEV LRGDQKEKIP VLLEPKPEES

Best Arabidopsis Sequence Match ( AT3G27925.1 )
(BLAST)

001: MATTTSCSLL LSSTLFLHSP PSSHLSFFNL SSSRSSPISL YPIRSKRYFR ILSKLSLNDN NRDDDDDTLH FTPFSAVKPF FLLCTSVALS FSLFAASPAV
101: ESASAFVVST PKKLQTDELA TVRLFQENTP SVVYITNLAV RQDAFTLDVL EVPQGSGSGF VWDKQGHIVT NYHVIRGASD LRVTLADQTT FDAKVVGFDQ
201: DKDVAVLRID APKNKLRPIP VGVSADLLVG QKVFAIGNPF GLDHTLTTGV ISGLRREISS AATGRPIQDV IQTDAAINPG NSGGPLLDSS GTLIGINTAI
301: YSPSGASSGV GFSIPVDTVG GIVDQLVRFG KVTRPILGIK FAPDQSVEQL GVSGVLVLDA PPSGPAGKAG LQSTKRDGYG RLVLGDIITS VNGTKVSNGS
401: DLYRILDQCK VGDEVTVEVL RGDHKEKISV TLEPKPDES

Arabidopsis Description

DEGP1DEGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V823]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.