Factsheet for VIT_18s0072g00970.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G089820.2	Barley	plastid	70.56	79.27
KRG93298	Soybean	nucleus, plastid	78.5	77.96
CDY58511	Canola	plastid	78.74	77.47
KRH56605	Soybean	plastid	77.1	77.46
AT3G27925.1	Thale cress	plastid	78.27	76.31
Bra025312.1-P	Field mustard	plastid	78.04	76.26
CDX86460	Canola	plastid	78.04	76.26
Solyc02g086830.2.1	Tomato	plastid	74.53	74.19
OQU78439	Sorghum	plastid	73.36	72.52
GSMUA_Achr1P13970_001	Banana	plastid	75.0	72.13
PGSC0003DMT400001298	Potato	plastid	71.96	71.63
TraesCS1B01G437600.1	Wheat	plastid	71.26	71.6
TraesCS1D01G416000.1	Wheat	plastid	71.5	71.33
Os05t0568900-01	Rice	plastid	71.26	69.79
TraesCS1A01G408900.1	Wheat	plastid	59.58	69.48
Zm00001d009613_P001	Maize	plastid	73.36	68.11
Zm00001d039059_P001	Maize	plastid	72.66	64.66
HORVU3Hr1G101230.2	Barley	plastid	40.19	57.53
VIT_00s1450g00010.t01	Wine grape	cytosol, peroxisome	17.99	48.12
Zm00001d020604_P001	Maize	plastid	27.1	46.03
VIT_10s0003g03850.t01	Wine grape	cytosol, peroxisome, plastid	23.13	42.49
VIT_14s0108g00580.t01	Wine grape	cytosol	39.95	40.81
VIT_00s1463g00010.t01	Wine grape	plastid	7.48	24.24
VIT_14s0060g02370.t01	Wine grape	mitochondrion	22.43	22.27

Protein Annotations

EntrezGene:100241896	wikigene:100241896	MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.10	ProteinID:CBI18180
ProteinID:CBI18180.3	UniProt:D7SR99	EMBL:FN594968	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004252	GO:GO:0005488	GO:GO:0005515	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0016787	GO:GO:0019538	InterPro:IPR001478	EntrezGene:LOC100241896	wikigene:LOC100241896
InterPro:PDZ	InterPro:PDZ_sf	PFAM:PF13180	PFAM:PF13365	PRINTS:PR00834	PFscan:PS50106
PANTHER:PTHR43343	PANTHER:PTHR43343:SF3	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA	MEROPS:S01.472	SMART:SM00228
SUPFAM:SSF50156	SUPFAM:SSF50494	TIGR:TC62150	TIGR:TC65545	UniParc:UPI0001BE158C	ArrayExpress:VIT_18s0072g00970
EnsemblPlantsGene:VIT_18s0072g00970	EnsemblPlants:VIT_18s0072g00970.t01	unigene:Vvi.400	RefSeq:XP_002267510	RefSeq:XP_002267510.2	SEG:seg

Description

No Description!

Coordinates

chr18:+:20396952..20422539

Molecular Weight (calculated)

45305.9 Da

IEP (calculated)

6.679

GRAVY (calculated)

0.054

Length

428 amino acids

Sequence
(BLAST)

001: MAAAYSLIST FFSNSPSPST AFSRSPNTKS IFSLSRHRVC LHRSPNLTTF ALHNHHNHSS QAPLSSALDS LLVLCTSVAL SFSLFVADVD SASAFVVTAP
101: RKLQNDELAT VRLFQENTPS VVYITNLAAR QDAFTLDVLE VPQGSGSGFV WDKDGHIVTN YHVIRGASDL RVTLADQTTY DARVVGFDQD KDVAVLRVDA
201: PKEKLRPIPV GVSADLLVGQ KVYAIGNPFG LDHTLTTGVI SGLRREISSA ATGRPIQDVI QTDAAINPGN SGGPLLDSSG SLIGINTAIY SPSGASSGVG
301: FSIPVDTVSG IVDQLVRFGK VTRPILGIKF APDQSVEQLG VSGVLVLDAP ANGPAGKAGL LPTKRDAYGR LILGDIITSV NGKKVSNGSD LYRILDQCKV
401: GDTVTVEVLR GDHIEKIPVL LEPKPDES

Best Arabidopsis Sequence Match ( AT3G27925.1 )
(BLAST)

001: MATTTSCSLL LSSTLFLHSP PSSHLSFFNL SSSRSSPISL YPIRSKRYFR ILSKLSLNDN NRDDDDDTLH FTPFSAVKPF FLLCTSVALS FSLFAASPAV
101: ESASAFVVST PKKLQTDELA TVRLFQENTP SVVYITNLAV RQDAFTLDVL EVPQGSGSGF VWDKQGHIVT NYHVIRGASD LRVTLADQTT FDAKVVGFDQ
201: DKDVAVLRID APKNKLRPIP VGVSADLLVG QKVFAIGNPF GLDHTLTTGV ISGLRREISS AATGRPIQDV IQTDAAINPG NSGGPLLDSS GTLIGINTAI
301: YSPSGASSGV GFSIPVDTVG GIVDQLVRFG KVTRPILGIK FAPDQSVEQL GVSGVLVLDA PPSGPAGKAG LQSTKRDGYG RLVLGDIITS VNGTKVSNGS
401: DLYRILDQCK VGDEVTVEVL RGDHKEKISV TLEPKPDES

Arabidopsis Description

DEGP1DEGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V823]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.