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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 22160430
msms PMID: 22160430 doi
AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1D01G416000.1 Wheat plastid 98.36 97.67
HORVU1Hr1G089820.2 Barley plastid 87.09 97.38
TraesCS1A01G408900.1 Wheat plastid 76.76 89.1
OQU78439 Sorghum plastid 81.22 79.91
Os05t0568900-01 Rice plastid 80.75 78.72
Zm00001d009613_P001 Maize plastid 80.75 74.62
Bra025312.1-P Field mustard plastid 74.41 72.37
CDX86460 Canola plastid 74.41 72.37
CDY58511 Canola plastid 73.47 71.95
VIT_18s0072g00970.t01 Wine grape plastid 71.6 71.26
GSMUA_Achr1P13970_001 Banana plastid 74.18 71.01
KRG93298 Soybean nucleus, plastid 71.83 71.0
KRH56605 Soybean plastid 70.89 70.89
PGSC0003DMT400001298 Potato plastid 70.66 70.0
AT3G27925.1 Thale cress plastid 71.6 69.48
Zm00001d039059_P001 Maize plastid 78.4 69.44
Solyc02g086830.2.1 Tomato plastid 69.95 69.3
Zm00001d020604_P001 Maize plastid 28.17 47.62
TraesCS5B01G030700.1 Wheat mitochondrion, plastid, vacuole 30.52 42.35
TraesCS2B01G342600.2 Wheat plastid 39.2 37.53
TraesCS4B01G087500.1 Wheat mitochondrion 23.94 24.17
Protein Annotations
MapMan:19.4.2.3Gene3D:2.30.42.10Gene3D:2.40.10.10GO:GO:0003674GO:GO:0003824GO:GO:0004252
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005737GO:GO:0006091GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0008236
GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009536GO:GO:0009579GO:GO:0009719
GO:GO:0009735GO:GO:0009987GO:GO:0010206GO:GO:0015979GO:GO:0016020GO:GO:0016787
GO:GO:0019538GO:GO:0031977GO:GO:0042802InterPro:IPR001478InterPro:PDZInterPro:PDZ_sf
PFAM:PF13180PFAM:PF13365PRINTS:PR00834PFscan:PS50106PANTHER:PTHR43019PANTHER:PTHR43019:SF4
InterPro:Peptidase_S1CInterPro:Peptidase_S1_PASMART:SM00228SUPFAM:SSF50156SUPFAM:SSF50494EnsemblPlantsGene:TraesCS1B01G437600
EnsemblPlants:TraesCS1B01G437600.1TIGR:cd00987SEG:seg:::
Description
No Description!
Coordinates
chr1B:-:660107780..660110945
Molecular Weight (calculated)
43997.0 Da
IEP (calculated)
8.205
GRAVY (calculated)
0.151
Length
426 amino acids
Sequence
(BLAST)
001: MAAACFLSGP SPLARPPPRP RHSLRRLAPA AAAGPPAGPL ALPASSRRPL RDLVPGPVAE AARRALAAAA GPLVVALASA ALVLGDAGAA SAFVVATPRK
101: LQADELATVR LFKDNTPSVV YITNLAVRQD AFTLDVLEVP QGSGSGFVWD KLGHIVTNFH VIRGASDLRV TLADQSVYEA QVVGFDQDKD VAVLSIEAPK
201: DKLRPLPVGV SADLLVGQKV YAIGNPFGLD HTLTTGVISG LRREISSAAT GRPIQDVIQT DAAINPGNSG GPLLDSSGNL IGVNTAIYSP SGASSGVGFS
301: IPVDTVGGIV DQLIQFGKVT RPILGIKFAP DQSVEQLGLS GVLVLDAPPN GPAGKAGLQS TKRDAYGRLI LGDIITSVNG TKVANGSDLY RILDQCKVGE
401: TVTVEVLRGD KKEKIAVVLE PKLDET
Best Arabidopsis Sequence Match ( AT3G27925.1 )
(BLAST)
001: MATTTSCSLL LSSTLFLHSP PSSHLSFFNL SSSRSSPISL YPIRSKRYFR ILSKLSLNDN NRDDDDDTLH FTPFSAVKPF FLLCTSVALS FSLFAASPAV
101: ESASAFVVST PKKLQTDELA TVRLFQENTP SVVYITNLAV RQDAFTLDVL EVPQGSGSGF VWDKQGHIVT NYHVIRGASD LRVTLADQTT FDAKVVGFDQ
201: DKDVAVLRID APKNKLRPIP VGVSADLLVG QKVFAIGNPF GLDHTLTTGV ISGLRREISS AATGRPIQDV IQTDAAINPG NSGGPLLDSS GTLIGINTAI
301: YSPSGASSGV GFSIPVDTVG GIVDQLVRFG KVTRPILGIK FAPDQSVEQL GVSGVLVLDA PPSGPAGKAG LQSTKRDGYG RLVLGDIITS VNGTKVSNGS
401: DLYRILDQCK VGDEVTVEVL RGDHKEKISV TLEPKPDES
Arabidopsis Description
DEGP1DEGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V823]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.