Factsheet for TraesCS4B01G087500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G014960.11	Barley	plastid	82.46	89.23
TraesCS4A01G228900.1	Wheat	mitochondrion	78.91	78.17
TraesCS4D01G084800.2	Wheat	cytosol	79.86	72.47
Zm00001d049018_P001	Maize	mitochondrion	70.14	69.32
OQU83155	Sorghum	mitochondrion	70.14	69.16
Os11t0246600-00	Rice	mitochondrion	64.22	61.31
GSMUA_Achr9P08110_001	Banana	mitochondrion	62.56	61.25
VIT_14s0060g02370.t01	Wine grape	mitochondrion	56.64	55.45
AT5G27660.2	Thale cress	mitochondrion	57.11	55.4
KRG96820	Soybean	mitochondrion	55.69	55.04
CDX80635	Canola	mitochondrion, plastid	54.5	53.86
CDX86147	Canola	plastid	55.45	53.3
GSMUA_Achr8P29040_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	42.42	52.49
GSMUA_Achr6P28780_001	Banana	mitochondrion	50.95	44.24
TraesCS5B01G030700.1	Wheat	mitochondrion, plastid, vacuole	18.01	24.76
TraesCS2B01G342600.2	Wheat	plastid	25.36	24.04
TraesCS1B01G437600.1	Wheat	plastid	24.17	23.94

Protein Annotations

MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.120	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0005488	GO:GO:0005515	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0019538	InterPro:IPR001478	InterPro:PDZ	InterPro:PDZ_sf	PFAM:PF13180	PFAM:PF13365
PRINTS:PR00834	PFscan:PS50106	PANTHER:PTHR22939	PANTHER:PTHR22939:SF109	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA
SMART:SM00228	SUPFAM:SSF50156	SUPFAM:SSF50494	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS4B01G087500	EnsemblPlants:TraesCS4B01G087500.1
TIGR:cd00987	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:87808773..87815187

Molecular Weight (calculated)

44175.5 Da

IEP (calculated)

8.496

GRAVY (calculated)

0.088

Length

422 amino acids

Sequence
(BLAST)

001: MFRNPRRAAL LLAAGAAAAG AGRLHDRGES ATVVTVSASA PLRHLLSTAA TGLISSNPLL APWQGGFPIL NSFASASVPP TNPINHASGG NSDDSRCCPG
101: CLGRNSIANA AAAVGPAVVN ISCMQENGWL REKSLGSGTI IDPDGTILTC AHLVTDFQST KPGLKGKVSV SLQDGREFEG VVLNFDHHSD IAVLKIKSKT
201: PLPAARLGSS CKLRPGDWVV ALGCPLSLQN TVTAGIVSCV DRKSSDLGLG GIRREYLQTD CAINIGNSGG PLVNLDGEII GVNVMKLRDA DGLSFSVPID
301: YVVKIVEHFK KNGRVVRLWL GLKMLDLNPM VIAQLKERSS SFPDVSKGVL VPMVTPGSPA ERAGFAPGDV VTEFDGKPVE TIKEIIGIMG DKVGVPFKVL
401: VKRANNVPVT LTVTPEEADA SR

Best Arabidopsis Sequence Match ( AT5G27660.2 )
(BLAST)

001: MMNFLRRAVS SSKRSELIRI ISVATATSGI LYASTNPDAR TRVSLAIPES VRESLSLLPW QISPGLIHRP EQSLFGNFVF SSRVSPKSEA PINDEKGVSV
101: EASDSSSKPS NGYLGRDTIA NAAARIGPAV VNLSVPQGFH GISMGKSIGS GTIIDADGTI LTCAHVVVDF QNIRHSSKGR VDVTLQDGRT FEGVVVNADL
201: QSDIALVKIK SKTPLPTAKL GFSSKLRPGD WVIAVGCPLS LQNTVTAGIV SCVDRKSSDL GLGGKHREYL QTDCSINAGN SGGPLVNLDG EVIGVNIMKV
301: LAADGLGFSV PIDSVSKIIE HFKKSGRVIR PWIGLKMVEL NNLIVAQLKE RDPMFPDVER GVLVPTVIPG SPADRAGFKP GDVVVRFDGK PVETIKEVIE
401: IMDDRVGKRM QVVVERSNKE RVTLEVIPEE ANPDM

Arabidopsis Description

Trypsin family protein with PDZ domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BBM9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.