Factsheet for GSMUA_Achr6P28780_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P08110_001	Banana	mitochondrion	52.26	58.93
HORVU4Hr1G014960.11	Barley	plastid	45.06	56.15
GSMUA_Achr8P29040_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	38.27	54.55
TraesCS4A01G228900.1	Wheat	mitochondrion	44.86	51.17
Zm00001d049018_P001	Maize	mitochondrion	44.86	51.05
TraesCS4B01G087500.1	Wheat	mitochondrion	44.24	50.95
OQU83155	Sorghum	mitochondrion	44.44	50.47
TraesCS4D01G084800.2	Wheat	cytosol	47.12	49.25
AT5G27660.2	Thale cress	mitochondrion	43.42	48.51
VIT_14s0060g02370.t01	Wine grape	mitochondrion	42.59	48.03
Os11t0246600-00	Rice	mitochondrion	42.8	47.06
CDX80635	Canola	mitochondrion, plastid	41.15	46.84
KRG96820	Soybean	mitochondrion	41.15	46.84
CDX86147	Canola	plastid	41.15	45.56
GSMUA_Achr10P...	Banana	mitochondrion	19.14	23.85
GSMUA_Achr1P13970_001	Banana	plastid	20.99	22.92

Protein Annotations

MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.120	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0005488	GO:GO:0005515	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G28780_001	EnsemblPlants:GSMUA_Achr6P28780_001	EnsemblPlants:GSMUA_Achr6T28780_001	InterPro:IPR001478	UniProt:M0TB23
InterPro:PDZ	InterPro:PDZ_sf	PFAM:PF13180	PFAM:PF13365	PRINTS:PR00834	PANTHER:PTHR22939
PANTHER:PTHR22939:SF109	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA	SMART:SM00228	SUPFAM:SSF50156	SUPFAM:SSF50494
UniParc:UPI000294DE9A	SEG:seg	:	:	:	:

Description

OsDegp12 - Putative Deg protease homologue, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G28780_001]

Coordinates

chr6:-:29078185..29085135

Molecular Weight (calculated)

52037.8 Da

IEP (calculated)

9.372

GRAVY (calculated)

-0.116

Length

486 amino acids

Sequence
(BLAST)

001: MRYNAIQIFC WPPRRAGGER GEWRGEGRSA IARHREAMFR RLLSPNPRRS AATGLLAIAA FYGGSSDGPS HRTSKPPSRS FRRFCSFSHL FPLPLSTDVG
101: VSISVPLRQL LSSTSEIFLR DFARPSLFSI GGRSPAASPF PDSDSNEEAL GKNHADAPCS ATSTETNFIA KAAALASPAV VNISVRKGGL MSSKSIGSGT
201: IIDPDGTILT CAHCVEDLDR KKRVCNGKVG VTLQDGREFE GTVVNADFVS DIAVVKIQSK IPLPAAKLGM SSKLHPGDFV IALGCPHALK NTITSGIISC
301: VDRKSSDLGL KGVQREYLQT DCAINKGNSG GPLVNLDGEV VGVNVMKFVA ADGLGFAVPV DSVVKIVEQF MKNGKVAQPW IGLKMLDLNE LKIAQCKDKD
401: ASCPDVRTDI VPVVTPASPA DRAGFRPGDT VIQFDGKPVR EIKEIVDSMR DQVGKPLKVL VKRANNKLVT LTVVPEMADM DRCNAA

Best Arabidopsis Sequence Match ( AT5G27660.2 )
(BLAST)

001: MMNFLRRAVS SSKRSELIRI ISVATATSGI LYASTNPDAR TRVSLAIPES VRESLSLLPW QISPGLIHRP EQSLFGNFVF SSRVSPKSEA PINDEKGVSV
101: EASDSSSKPS NGYLGRDTIA NAAARIGPAV VNLSVPQGFH GISMGKSIGS GTIIDADGTI LTCAHVVVDF QNIRHSSKGR VDVTLQDGRT FEGVVVNADL
201: QSDIALVKIK SKTPLPTAKL GFSSKLRPGD WVIAVGCPLS LQNTVTAGIV SCVDRKSSDL GLGGKHREYL QTDCSINAGN SGGPLVNLDG EVIGVNIMKV
301: LAADGLGFSV PIDSVSKIIE HFKKSGRVIR PWIGLKMVEL NNLIVAQLKE RDPMFPDVER GVLVPTVIPG SPADRAGFKP GDVVVRFDGK PVETIKEVIE
401: IMDDRVGKRM QVVVERSNKE RVTLEVIPEE ANPDM

Arabidopsis Description

Trypsin family protein with PDZ domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BBM9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.