CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56605	Soybean	plastid	83.06	84.04
HORVU1Hr1G089820.2	Barley	plastid	70.07	79.27
VIT_18s0072g00970.t01	Wine grape	plastid	77.96	78.5
CDY58511	Canola	plastid	77.03	76.32
Bra025312.1-P	Field mustard	plastid	76.8	75.57
CDX86460	Canola	plastid	76.8	75.57
AT3G27925.1	Thale cress	plastid	76.33	74.94
OQU78439	Sorghum	plastid	73.55	73.21
Solyc02g086830.2.1	Tomato	plastid	72.85	73.02
Os05t0568900-01	Rice	plastid	73.78	72.77
GSMUA_Achr1P13970_001	Banana	plastid	74.48	72.13
TraesCS1B01G437600.1	Wheat	plastid	71.0	71.83
PGSC0003DMT400001298	Potato	plastid	71.23	71.4
TraesCS1D01G416000.1	Wheat	plastid	71.0	71.33
TraesCS1A01G408900.1	Wheat	plastid	60.32	70.84
Zm00001d009613_P001	Maize	plastid	72.39	67.68
Zm00001d039059_P001	Maize	plastid	72.39	64.86
HORVU3Hr1G101230.2	Barley	plastid	39.44	56.86
Zm00001d020604_P001	Maize	plastid	27.15	46.43
KRH18481	Soybean	plastid	42.46	39.87
KRH21081	Soybean	plastid	26.68	37.83
KRH11171	Soybean	plastid	24.36	37.37
KRG96820	Soybean	mitochondrion	22.51	22.72

Protein Annotations

MapMan:19.4.2.3	Gene3D:2.30.42.10	Gene3D:2.40.10.10	EMBL:ACUP02011547	EnsemblPlantsGene:GLYMA_19G007800	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005488	GO:GO:0005515	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	UniProt:I1N5Q9	InterPro:IPR001478	EnsemblPlants:KRG93298
ProteinID:KRG93298	ProteinID:KRG93298.1	InterPro:PDZ	InterPro:PDZ_sf	PFAM:PF13180	PFAM:PF13365
PRINTS:PR00834	PFscan:PS50106	PANTHER:PTHR43343	PANTHER:PTHR43343:SF3	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA
MEROPS:S01.472	SMART:SM00228	SUPFAM:SSF50156	SUPFAM:SSF50494	UniParc:UPI000233F00B	SEG:seg

Description

hypothetical protein

Coordinates

chr19:-:784152..789994

Molecular Weight (calculated)

45647.0 Da

IEP (calculated)

7.129

GRAVY (calculated)

0.078

Length

431 amino acids

Sequence
(BLAST)

001: MATCSLISTL FPSPSSSSFS LSRSSSNTTK PTTIHLSKSL HLQTPILFLL RPPNPKPTLP IIPLFPKLTI PNSLLLLCTS LALSFTLLLS PADSAAAFVV
101: TSPRKLQSDE LATVRLFQEN TPSVVYITNL AVKQDAFTLD VLEVPQGSGS GFVWDKEGHI VTNYHVIRGA SDLKVTLADQ STYDANVVGF DQDKDVAVLR
201: VDAPKDKLRP IPIGVSADLL VGQKVYAIGN PFGLDHTLTT GVISGLRREI SSAATGRPIQ DVIQTDAAIN PGNSGGPLLD SSGNLIGINT AIYSPSGASS
301: GVGFSIPVDT VNGIVDQLVK FGKVTRPILG IKFAPDQSVE QLGVSGVLVL DAPANGPAGK AGLQSTKRDS YGRLILGDII TSVNDKKVTN GSDLYRILDQ
401: CKVGDKVIVE VLRGDHKEKI PVILEPKPDE S

Best Arabidopsis Sequence Match ( AT3G27925.1 )
(BLAST)

001: MATTTSCSLL LSSTLFLHSP PSSHLSFFNL SSSRSSPISL YPIRSKRYFR ILSKLSLNDN NRDDDDDTLH FTPFSAVKPF FLLCTSVALS FSLFAASPAV
101: ESASAFVVST PKKLQTDELA TVRLFQENTP SVVYITNLAV RQDAFTLDVL EVPQGSGSGF VWDKQGHIVT NYHVIRGASD LRVTLADQTT FDAKVVGFDQ
201: DKDVAVLRID APKNKLRPIP VGVSADLLVG QKVFAIGNPF GLDHTLTTGV ISGLRREISS AATGRPIQDV IQTDAAINPG NSGGPLLDSS GTLIGINTAI
301: YSPSGASSGV GFSIPVDTVG GIVDQLVRFG KVTRPILGIK FAPDQSVEQL GVSGVLVLDA PPSGPAGKAG LQSTKRDGYG RLVLGDIITS VNGTKVSNGS
401: DLYRILDQCK VGDEVTVEVL RGDHKEKISV TLEPKPDES

Arabidopsis Description

DEGP1DEGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V823]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.