Factsheet for PGSC0003DMT400076806

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
vacuole 3
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g048550.2.1	Tomato	plastid	87.09	85.95
VIT_00s1450g00010.t01	Wine grape	cytosol, peroxisome	42.05	79.38
KRH21081	Soybean	plastid	63.91	63.49
KRH11171	Soybean	plastid	57.28	61.57
CDX99473	Canola	plastid	61.26	58.92
Bra013300.1-P	Field mustard	plastid	61.26	58.54
CDX78844	Canola	plastid	61.26	58.54
AT4G18370.1	Thale cress	plastid	62.25	58.2
EES16390	Sorghum	plastid	57.28	56.17
Zm00001d000230_P002	Maize	plastid	55.96	54.69
TraesCS5B01G030700.1	Wheat	mitochondrion, plastid, vacuole	54.97	54.07
TraesCS5A01G031100.1	Wheat	mitochondrion	54.97	53.9
TraesCS5D01G039300.1	Wheat	mitochondrion	54.97	53.38
HORVU5Hr1G008160.5	Barley	mitochondrion	54.97	49.4
Os12t0616600-01	Rice	plastid, vacuole	17.88	34.62
PGSC0003DMT400017849	Potato	plastid	40.4	26.52
PGSC0003DMT400001298	Potato	plastid	37.42	26.28

Protein Annotations

EntrezGene:102584197	MapMan:19.4.2.3	Gene3D:2.40.10.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009543	GO:GO:0009579
GO:GO:0009987	GO:GO:0010206	GO:GO:0015979	GO:GO:0016787	GO:GO:0019538	GO:GO:0031977
UniProt:M1CXF1	PFAM:PF13365	EnsemblPlantsGene:PGSC0003DMG400029873	PGSC:PGSC0003DMG400029873	EnsemblPlants:PGSC0003DMT400076806	PRINTS:PR00834
PANTHER:PTHR43019	PANTHER:PTHR43019:SF3	InterPro:Peptidase_S1C	InterPro:Peptidase_S1_PA	MEROPS:S01.441	SUPFAM:SSF50494
UniParc:UPI0002956341	RefSeq:XP_006355414.1	SEG:seg	:	:	:

Description

Protease degS [Source:PGSC_GENE;Acc:PGSC0003DMG400029873]

Coordinates

chr8:+:13187928..13194850

Molecular Weight (calculated)

32147.5 Da

IEP (calculated)

7.629

GRAVY (calculated)

0.064

Length

302 amino acids

Sequence
(BLAST)

001: MVVLGVVVSP QAQHILLSIP TKIPPQYCTR RKALIFTSSL FSSFIYTSHH SPATAFQIEM PQQEEDRLVH LFQETSPSVV FIKDLELAKG SNDSTKVLAD
101: DENAKVEGTG SGFIWDKFGH IVTNYHVIAK LATDNIGLQR CKVSLVNAKG ESIVKDAKIV GVDPANDLAV LKVDIEGVEV KPVSVGTSRG LRVGQSCFAI
201: GNPYGFENTL TTGVVSGLGR EIPAPNGAAI KGAIQTDAAI NAGNSGGPLI DSSGHVIGVN TATFTRRGSG MSSGVNFAIP IDTVVRTIPY LIVYGTSYKD
301: RY

Best Arabidopsis Sequence Match ( AT4G18370.1 )
(BLAST)

001: MTMALASSKA FSSIFNTLSP INQSKFVLAC SGSNHVDVID RRRRIMIFGS SLALTSSLLG SNQQRLPMES AIALEQFKEK EEELEEEEER NVNLFQKTSP
101: SVVYIEAIEL PKTSSGDILT DEENGKIEGT GSGFVWDKLG HIVTNYHVIA KLATDQFGLQ RCKVSLVDAK GTRFSKEGKI VGLDPDNDLA VLKIETEGRE
201: LNPVVLGTSN DLRVGQSCFA IGNPYGYENT LTIGVVSGLG REIPSPNGKS ISEAIQTDAD INSGNSGGPL LDSYGHTIGV NTATFTRKGS GMSSGVNFAI
301: PIDTVVRTVP YLIVYGTAYR DRF

Arabidopsis Description

DEGP5Protease Do-like 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SEL7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.