Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G199500.1 | Wheat | nucleus | 95.83 | 100.0 |
| TraesCS1D01G203200.1 | Wheat | nucleus | 95.83 | 100.0 |
| EER92016 | Sorghum | nucleus | 92.26 | 96.88 |
| Zm00001d047354_P001 | Maize | nucleus | 89.88 | 94.38 |
| Os10t0536000-01 | Rice | cytosol | 89.29 | 93.75 |
| TraesCS4B01G346600.2 | Wheat | cytosol | 88.69 | 92.55 |
| GSMUA_Achr3P05370_001 | Banana | cytosol | 87.5 | 91.88 |
| KRH04554 | Soybean | nucleus | 85.71 | 90.0 |
| KRH57897 | Soybean | nucleus | 85.71 | 90.0 |
| KRH28435 | Soybean | cytosol | 85.12 | 89.94 |
| VIT_07s0031g00160.t01 | Wine grape | nucleus | 86.31 | 89.51 |
| HORVU1Hr1G051610.3 | Barley | nucleus | 94.64 | 89.33 |
| KRH77039 | Soybean | cytosol | 84.52 | 89.31 |
| Solyc02g093110.2.1 | Tomato | nucleus | 84.52 | 88.75 |
| GSMUA_Achr9P14150_001 | Banana | nucleus | 83.93 | 88.12 |
| Solyc03g044260.2.1 | Tomato | nucleus | 83.93 | 88.12 |
| AT3G57870.1 | Thale cress | cytosol | 82.74 | 86.88 |
| CDX93982 | Canola | cytosol | 79.76 | 83.75 |
| Bra014406.1-P | Field mustard | cytosol | 79.17 | 83.12 |
| CDY66302 | Canola | cytosol | 79.17 | 83.12 |
| PGSC0003DMT400016581 | Potato | nucleus | 78.57 | 78.57 |
| PGSC0003DMT400025497 | Potato | extracellular | 61.31 | 74.64 |
| VIT_18s0001g10100.t01 | Wine grape | nucleus | 79.17 | 68.21 |
| TraesCS2B01G413400.1 | Wheat | peroxisome | 63.1 | 66.67 |
| Solyc07g021670.1.1 | Tomato | cytosol, mitochondrion | 23.21 | 65.0 |
| PGSC0003DMT400014261 | Potato | nucleus | 30.36 | 55.43 |
| TraesCS3B01G390400.1 | Wheat | cytosol, nucleus, plastid | 29.76 | 29.59 |
| TraesCS1B01G294400.2 | Wheat | plastid | 30.95 | 26.0 |
| TraesCS3B01G216000.2 | Wheat | plastid | 32.74 | 25.11 |
Protein Annotations
| MapMan:19.2.2.2.3 | Gene3D:3.10.110.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0019789 | InterPro:IPR000608 |
| InterPro:IPR016135 | PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43927 | PANTHER:PTHR43927:SF4 |
| SMART:SM00212 | SUPFAM:SSF54495 | EnsemblPlantsGene:TraesCS1B01G214400 | EnsemblPlants:TraesCS1B01G214400.2 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS |
| InterPro:UBQ-conjugating_enzyme/RWD | InterPro:Ubc9 | TIGR:cd00195 | : | : | : |
Description
No Description!
Coordinates
chr1B:-:389091506..389094114
Molecular Weight (calculated)
18840.5 Da
IEP (calculated)
8.793
GRAVY (calculated)
-0.494
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGGIARGR LAEERKAWRK NHPHVRITPL PGFVAKPETV ADGSVNLMIW NCTIPGKQGT DWESGYYPLT LHFSEDYPSK PPKCKFPQGF FHPNVYPSGT
101: VCLSILNEDS GWRPAITVKQ ILVGIQDLLD QPNPADPAQT DGYHLFIQDP AEYKRRIRLQ AKQYPALV
101: VCLSILNEDS GWRPAITVKQ ILVGIQDLLD QPNPADPAQT DGYHLFIQDP AEYKRRIRLQ AKQYPALV
001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
Arabidopsis Description
SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.