CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92178
KRG97837
KRH31032

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57870.1	KRG97837	AT2G39760.1	21798944
AT3G57870.1	KRH31032	AT2G39760.1	21798944
AT3G57870.1	KRG92178	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04554	Soybean	nucleus	100.0	100.0
KRH28435	Soybean	cytosol	96.88	97.48
KRH77039	Soybean	cytosol	95.62	96.23
GSMUA_Achr1P03640_001	Banana	nucleus	95.62	95.62
VIT_07s0031g00160.t01	Wine grape	nucleus	95.62	94.44
GSMUA_AchrUn_...	Banana	nucleus	94.38	94.38
EER95612	Sorghum	nucleus	93.75	93.75
Os03t0123100-01	Rice	cytosol	93.12	93.12
TraesCS4D01G341600.2	Wheat	cytosol	93.12	92.55
TraesCS4B01G346600.2	Wheat	cytosol	93.12	92.55
TraesCS5A01G515400.1	Wheat	cytosol	93.12	92.55
Zm00001d027427_P001	Maize	nucleus	92.5	92.5
Zm00001d048473_P003	Maize	nucleus	92.5	92.5
GSMUA_Achr3P05370_001	Banana	cytosol	91.88	91.88
EER92016	Sorghum	nucleus	90.62	90.62
Os10t0536000-01	Rice	cytosol	90.62	90.62
Zm00001d047354_P001	Maize	nucleus	90.62	90.62
TraesCS1D01G203200.1	Wheat	nucleus	90.0	89.44
TraesCS1A01G199500.1	Wheat	nucleus	90.0	89.44
CDY70581	Canola	cytosol	89.38	89.38
CDY47661	Canola	cytosol	89.38	89.38
Bra014602.1-P	Field mustard	cytosol	89.38	89.38
CDX88967	Canola	cytosol	89.38	89.38
Bra003301.1-P	Field mustard	cytosol	88.75	88.75
Bra007363.1-P	Field mustard	cytosol	88.75	88.75
CDX67711	Canola	cytosol	88.75	88.75
CDX98253	Canola	cytosol	88.75	88.75
CDX71988	Canola	nucleus	88.12	88.12
AT3G57870.1	Thale cress	cytosol	87.5	87.5
GSMUA_Achr9P14150_001	Banana	nucleus	87.5	87.5
PGSC0003DMT400020524	Potato	cytosol	86.25	86.25
Solyc04g078620.2.1	Tomato	nucleus	86.25	86.25
TraesCS1B01G214400.2	Wheat	nucleus	90.0	85.71
Solyc12g088680.1.1	Tomato	cytosol	85.0	85.0
Zm00001d029740_P002	Maize	nucleus	84.38	84.38
PGSC0003DMT400039840	Potato	mitochondrion	83.12	83.12
HORVU1Hr1G051610.3	Barley	nucleus	89.38	80.34
HORVU4Hr1G084760.5	Barley	plastid	90.0	74.61
VIT_18s0001g10100.t01	Wine grape	nucleus	84.38	69.23
KRH10280	Soybean	nucleus	31.88	30.72
KRH23052	Soybean	nucleus	31.88	30.72
KRH29815	Soybean	cytosol	31.25	30.12
KRH24817	Soybean	cytosol, nucleus, plastid	31.25	29.94
KRH24100	Soybean	cytosol, plastid	33.12	29.44
KRH34891	Soybean	nucleus, plastid	33.12	28.49
KRG91877	Soybean	cytosol, plastid	31.88	27.42
KRH29075	Soybean	cytosol, golgi, peroxisome, plastid	28.75	25.41

Protein Annotations

EntrezGene:100500268	EntrezGene:100793579	MapMan:19.2.2.2.3	Gene3D:3.10.110.10	EMBL:ACUP02003086	EMBL:ACUP02010442
EMBL:BT091180	UniProt:C6T174	EnsemblPlantsGene:GLYMA_05G091100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0016925	GO:GO:0019538	GO:GO:0019789	InterPro:IPR000608	InterPro:IPR016135	ProteinID:KRH04554.1
EnsemblPlants:KRH57897	ProteinID:KRH57897	ProteinID:KRH57897.1	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR43927	PANTHER:PTHR43927:SF4	MetaCyc:PWY-7511	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0001B156F4	InterPro:Ubc9	:	:

Description

hypothetical protein

Coordinates

chr5:-:21229068..21232832

Molecular Weight (calculated)

18071.5 Da

IEP (calculated)

8.472

GRAVY (calculated)

-0.601

Length

160 amino acids

Sequence
(BLAST)

001: MSGGIARGRL TEERKSWRKN HPHGFVAKPE TLPDGTVNLM VWHCTIPGKT GTDWEGGYFP LTLHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DSGWRPAITV KQILVGIQDL LDQPNPADPA QTEGYHLFIQ DAAEYKRRVR QQAKQYPPLL

Best Arabidopsis Sequence Match ( AT3G57870.1 )
(BLAST)

001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV

Arabidopsis Description

SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.