CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34891	Soybean	nucleus, plastid	94.62	94.62
VIT_13s0019g04090.t01	Wine grape	cytosol	81.72	80.0
GSMUA_Achr10P...	Banana	cytosol	55.91	79.39
GSMUA_Achr7P22730_001	Banana	cytosol	73.12	74.32
KRH24100	Soybean	cytosol, plastid	58.6	60.56
KRH29075	Soybean	cytosol, golgi, peroxisome, plastid	52.15	53.59
KRH29815	Soybean	cytosol	29.57	33.13
KRH24817	Soybean	cytosol, nucleus, plastid	29.57	32.93
KRH10280	Soybean	nucleus	29.03	32.53
KRH23052	Soybean	nucleus	29.03	32.53
KRH04554	Soybean	nucleus	27.42	31.88
KRH57897	Soybean	nucleus	27.42	31.88
KRH28435	Soybean	cytosol	26.88	31.45
KRH77039	Soybean	cytosol	26.88	31.45

Protein Annotations

EntrezGene:100813446	MapMan:13.3.4.1.2	Gene3D:3.10.110.10	EMBL:ACUP02012712	EnsemblPlantsGene:GLYMA_20G178900	GO:GO:0000166
GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0019538	GO:GO:0030071	GO:GO:0031145	GO:GO:0031625	GO:GO:0061630
UniProt:I1NHE9	InterPro:IPR000608	InterPro:IPR016135	ProteinID:KRG91876.1	EnsemblPlants:KRG91877	ProteinID:KRG91877
ProteinID:KRG91877.1	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR44189	MetaCyc:PWY-7511
SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000233DA1B
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:41623186..41626015

Molecular Weight (calculated)

20930.8 Da

IEP (calculated)

4.710

GRAVY (calculated)

-0.399

Length

186 amino acids

Sequence
(BLAST)

001: MEVRSNPAAD NSSDHRRPPA VSSMQPLPSP NPVDTSAVSQ RLQKELMTLM MSGGDLGVSA FPDGESIFTW IGTIEGGKGT LYEGLSYKLS LRFPLDYPFK
101: APQVKFETMC FHPNIDQFGN ICLDILQDKW SSAYDCRTIL LSIQSLLEEP NLESPLNSYA AALWNDKEDY RRMVHKQYFA REALES

Best Arabidopsis Sequence Match ( AT1G50490.1 )
(BLAST)

001: MAAVNGYQGN TPADPPASNG SKQPAAPTKT VDSQSVLKRL QSELMGLMMG GGPGISAFPE EDNIFCWKGT ITGSKDTVFE GTEYRLSLSF SNDYPFKPPK
101: VKFETCCFHP NVDVYGNICL DILQDKWSSA YDVRTILLSI QSLLGEPNIS SPLNTQAAQL WSNQEEYRKM VEKLYKPPSA

Arabidopsis Description

UBC20Ubiquitin-conjugating enzyme E2 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7T3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.