CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24840
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20060.1	KRH10294	AT3G46090.1	17259181
AT3G20060.1	KRH23029	AT3G46090.1	17259181
AT3G20060.1	KRH24840	AT3G46090.1	17259181
AT3G20060.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030487.1-P	Field mustard	cytosol, plastid	81.11	83.91
CDY62105	Canola	cytosol, plastid	81.11	83.43
CDY29588	Canola	cytosol, plastid	81.11	83.43
VIT_06s0061g00070.t01	Wine grape	cytosol	81.11	82.49
AT1G50490.1	Thale cress	plastid	82.22	82.22
Bra035819.1-P	Field mustard	cytosol, plastid	82.22	81.77
CDY42228	Canola	plastid	82.22	81.77
CDY25375	Canola	plastid	82.22	81.32
CDY24563	Canola	cytosol, nucleus, peroxisome, plastid	82.22	81.32
CDY45063	Canola	cytosol	57.78	81.25
CDY22799	Canola	cytosol, plastid	81.67	81.22
CDY37132	Canola	cytosol, plastid	81.67	81.22
Bra018852.1-P	Field mustard	cytosol, plastid	81.67	81.22
PGSC0003DMT400080256	Potato	cytosol, plastid	80.0	80.9
Solyc11g065190.1.1	Tomato	plastid	81.11	80.66
CDY33445	Canola	nucleus	81.11	80.66
Bra038253.1-P	Field mustard	nucleus	81.11	80.66
AT3G20060.1	Thale cress	plastid	80.56	80.11
KRH29075	Soybean	cytosol, golgi, peroxisome, plastid	79.44	79.01
GSMUA_Achr3P08740_001	Banana	cytosol	72.78	71.98
GSMUA_Achr9P17810_001	Banana	cytosol	70.56	68.65
TraesCS3A01G186500.1	Wheat	cytosol, plastid	69.44	67.2
Bra014255.1-P	Field mustard	cytosol	59.44	65.24
Zm00001d008260_P001	Maize	cytosol, mitochondrion, nucleus, plastid	65.56	64.48
KXG32249	Sorghum	plastid	65.56	64.13
Os01t0273100-01	Rice	plastid	67.22	63.35
HORVU3Hr1G038430.3	Barley	nucleus, plastid	63.89	60.85
KRH34891	Soybean	nucleus, plastid	62.78	60.75
TraesCS3D01G190400.2	Wheat	nucleus, plastid	64.44	60.1
OQU80782	Sorghum	nucleus, plastid	62.22	59.57
CDY03608	Canola	nucleus	38.89	59.32
KRG91877	Soybean	cytosol, plastid	60.56	58.6
TraesCS3B01G216000.2	Wheat	plastid	69.44	57.08
Zm00001d008261_P003	Maize	nucleus	55.0	38.98
KRH23052	Soybean	nucleus	31.11	33.73
KRH10280	Soybean	nucleus	31.11	33.73
KRH24817	Soybean	cytosol, nucleus, plastid	31.11	33.53
KRH29815	Soybean	cytosol	30.56	33.13
KRH57897	Soybean	nucleus	29.44	33.12
KRH04554	Soybean	nucleus	29.44	33.12
KRH77039	Soybean	cytosol	28.89	32.7
KRH28435	Soybean	cytosol	28.89	32.7

Protein Annotations

EntrezGene:100305664	MapMan:13.3.4.1.2	Gene3D:3.10.110.10	EMBL:ACUP02007170	EnsemblPlantsGene:GLYMA_12G021800	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0019538
GO:GO:0030071	GO:GO:0031145	GO:GO:0031625	GO:GO:0061630	UniProt:I1LPD6	InterPro:IPR000608
InterPro:IPR016135	EnsemblPlants:KRH24100	ProteinID:KRH24100	ProteinID:KRH24100.1	PFAM:PF00179	PFscan:PS50127
PANTHER:PTHR44189	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00023CC449

Description

hypothetical protein

Coordinates

chr12:-:1572976..1574844

Molecular Weight (calculated)

20192.8 Da

IEP (calculated)

5.635

GRAVY (calculated)

-0.480

Length

180 amino acids

Sequence
(BLAST)

001: MAATNNIHGN TESAQSNIAP PTKQPLHPSK TVDSQSVLKR LQSELMALMM SGDSGISAFP EEDNIFFWKG TITGSKDTVF EGTEYKLSLS FPNDYPFKPP
101: KVKFETTCFH PNFDVHGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNQQAAQ LWSNQEEYRK MVEKLYKSAN

Best Arabidopsis Sequence Match ( AT3G20060.1 )
(BLAST)

001: MATVNGYTGN TPAATTPAAT GSKQSAPPTK TVDSHSVLKR LQSELMGLMM GADPGISAFP EEDNIFCWKG TITGSKDTVF EGTEYRLSLT FSNDYPFKSP
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN A

Arabidopsis Description

UBC19UBC19 [Source:UniProtKB/TrEMBL;Acc:A0A178V7W3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.