Factsheet for Bra038253.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42228	Canola	plastid	98.89	98.89
Bra035819.1-P	Field mustard	cytosol, plastid	96.13	96.13
AT3G20060.1	Thale cress	plastid	92.82	92.82
Bra030487.1-P	Field mustard	cytosol, plastid	87.29	90.8
Bra018852.1-P	Field mustard	cytosol, plastid	90.06	90.06
VIT_06s0061g00070.t01	Wine grape	cytosol	79.56	81.36
KRH24100	Soybean	cytosol, plastid	80.66	81.11
PGSC0003DMT400080256	Potato	cytosol, plastid	77.9	79.21
Solyc11g065190.1.1	Tomato	plastid	78.45	78.45
GSMUA_Achr3P08740_001	Banana	cytosol	72.38	71.98
GSMUA_Achr9P17810_001	Banana	cytosol	71.82	70.27
TraesCS3A01G186500.1	Wheat	cytosol, plastid	71.27	69.35
Bra014255.1-P	Field mustard	cytosol	61.33	67.68
Os01t0273100-01	Rice	plastid	70.72	67.02
KXG32249	Sorghum	plastid	67.96	66.85
KRH29075	Soybean	cytosol, golgi, peroxisome, plastid	65.75	65.75
Zm00001d008260_P001	Maize	cytosol, mitochondrion, nucleus, plastid	66.3	65.57
OQU80782	Sorghum	nucleus, plastid	65.19	62.77
HORVU3Hr1G038430.3	Barley	nucleus, plastid	65.19	62.43
TraesCS3D01G190400.2	Wheat	nucleus, plastid	65.75	61.66
TraesCS3B01G216000.2	Wheat	plastid	71.27	58.9
Zm00001d008261_P003	Maize	nucleus	55.25	39.37
Bra014602.1-P	Field mustard	cytosol	31.49	35.62
Bra007363.1-P	Field mustard	cytosol	31.49	35.62
Bra003301.1-P	Field mustard	cytosol	31.49	35.62
Bra014406.1-P	Field mustard	cytosol	30.94	35.0
Bra014751.1-P	Field mustard	cytosol, nucleus, plastid	32.04	34.73
Bra003210.1-P	Field mustard	nucleus	31.49	34.13
Bra002579.1-P	Field mustard	cytosol	27.62	31.45
Bra020324.1-P	Field mustard	nucleus	29.28	31.18
Bra007157.1-P	Field mustard	nucleus	28.73	31.14

Protein Annotations

MapMan:13.3.4.1.2	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra038253	EnsemblPlants:Bra038253.1	EnsemblPlants:Bra038253.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	UniProt:M4FAY7	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR44189
SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002544902

Description

AT3G20060 (E=3e-097) UBC19 | UBC19 (ubiquitin-conjugating enzyme19); ubiquitin-protein ligase

Coordinates

chrA01:+:21288312..21289646

Molecular Weight (calculated)

19988.7 Da

IEP (calculated)

4.748

GRAVY (calculated)

-0.405

Length

181 amino acids

Sequence
(BLAST)

001: MAAVNGYQGN TPAETTPAAT GSKQPAPPAK TVDSQSVLKR LQSELMGLMM GGDPGVSAFP EEDNIFCWKG TITGSNDTVF QGTEYRLSLA FSNDYPFKPP
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN P

Best Arabidopsis Sequence Match ( AT3G20060.1 )
(BLAST)

001: MATVNGYTGN TPAATTPAAT GSKQSAPPTK TVDSHSVLKR LQSELMGLMM GADPGISAFP EEDNIFCWKG TITGSKDTVF EGTEYRLSLT FSNDYPFKSP
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN A

Arabidopsis Description

UBC19UBC19 [Source:UniProtKB/TrEMBL;Acc:A0A178V7W3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.