CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008260_P001	Maize	cytosol, mitochondrion, nucleus, plastid	95.65	96.17
OQU80782	Sorghum	nucleus, plastid	88.59	86.7
TraesCS3A01G186500.1	Wheat	cytosol, plastid	82.61	81.72
Os01t0273100-01	Rice	plastid	82.07	79.06
HORVU3Hr1G038430.3	Barley	nucleus, plastid	76.63	74.6
TraesCS3D01G190400.2	Wheat	nucleus, plastid	76.09	72.54
CDY45063	Canola	cytosol	50.0	71.88
Bra030487.1-P	Field mustard	cytosol, plastid	67.39	71.26
GSMUA_Achr3P08740_001	Banana	cytosol	70.11	70.88
CDY29588	Canola	cytosol, plastid	67.39	70.86
CDY62105	Canola	cytosol, plastid	66.85	70.29
GSMUA_Achr9P17810_001	Banana	cytosol	70.65	70.27
TraesCS3B01G216000.2	Wheat	plastid	82.61	69.41
CDY37132	Canola	cytosol, plastid	67.39	68.51
CDY42228	Canola	plastid	67.39	68.51
CDY22799	Canola	cytosol, plastid	67.39	68.51
Bra018852.1-P	Field mustard	cytosol, plastid	67.39	68.51
AT1G50490.1	Thale cress	plastid	66.85	68.33
Bra038253.1-P	Field mustard	nucleus	66.85	67.96
Bra035819.1-P	Field mustard	cytosol, plastid	66.3	67.4
PGSC0003DMT400080256	Potato	cytosol, plastid	64.67	66.85
CDY33445	Canola	nucleus	65.76	66.85
Solyc11g065190.1.1	Tomato	plastid	65.76	66.85
VIT_06s0061g00070.t01	Wine grape	cytosol	64.13	66.67
CDY25375	Canola	plastid	65.76	66.48
CDY24563	Canola	cytosol, nucleus, peroxisome, plastid	65.76	66.48
AT3G20060.1	Thale cress	plastid	65.22	66.3
KRH24100	Soybean	cytosol, plastid	64.13	65.56
Bra014255.1-P	Field mustard	cytosol	51.09	57.32
KRH29075	Soybean	cytosol, golgi, peroxisome, plastid	52.72	53.59
CDY03608	Canola	nucleus	30.43	47.46
EER95612	Sorghum	nucleus	30.43	35.0
EER92016	Sorghum	nucleus	30.43	35.0
EES12706	Sorghum	mitochondrion	29.35	33.96
EES12705	Sorghum	mitochondrion	28.8	33.33
EES03856	Sorghum	cytosol, nucleus, plastid	29.89	32.54
KXG22164	Sorghum	cytosol, nucleus, plastid	27.72	29.65
OQU82197	Sorghum	cytosol	25.54	27.98

Protein Annotations

MapMan:13.3.4.1.2	Gene3D:3.10.110.10	UniProt:A0A1B6Q2V0	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135	EnsemblPlants:KXG32249
ProteinID:KXG32249	ProteinID:KXG32249.1	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR44189
MetaCyc:PWY-7511	SMART:SM00212	EnsemblPlantsGene:SORBI_3003G127600	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0003E64103	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:11719447..11720805

Molecular Weight (calculated)

19664.1 Da

IEP (calculated)

4.972

GRAVY (calculated)

-0.334

Length

184 amino acids

Sequence
(BLAST)

001: MARGENQESQ TGNVPAASAA SATGAKPASA GTGKGAEGQS VVRRLQSELM ALMMGGDPGV SAFPEGDNML HWVGTIEGSA GTAYEGTSYR LALAFTAEYP
101: YKPPKVRFDT PCFHPNVDVH GNICLDILQD KWSSAYDVRT ILLSIQSLLG EPNNDSPLNT QAAALWANQE EFRKMVEKLY KPAA

Best Arabidopsis Sequence Match ( AT3G20060.1 )
(BLAST)

001: MATVNGYTGN TPAATTPAAT GSKQSAPPTK TVDSHSVLKR LQSELMGLMM GADPGISAFP EEDNIFCWKG TITGSKDTVF EGTEYRLSLT FSNDYPFKSP
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN A

Arabidopsis Description

UBC19UBC19 [Source:UniProtKB/TrEMBL;Acc:A0A178V7W3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.