Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12706 | Sorghum | mitochondrion | 79.25 | 79.25 |
| EER95612 | Sorghum | nucleus | 72.96 | 72.5 |
| TraesCS2B01G413400.1 | Wheat | peroxisome | 71.7 | 71.7 |
| EER92016 | Sorghum | nucleus | 71.07 | 70.62 |
| Solyc03g112720.2.1 | Tomato | nucleus | 62.89 | 67.11 |
| PGSC0003DMT400046775 | Potato | nucleus | 66.67 | 65.84 |
| OQU82197 | Sorghum | cytosol | 69.18 | 65.48 |
| TraesCS2D01G393100.2 | Wheat | endoplasmic reticulum | 63.52 | 58.05 |
| TraesCS2A01G395300.2 | Wheat | endoplasmic reticulum, extracellular | 63.52 | 58.05 |
| Os04t0580400-01 | Rice | cytosol | 49.69 | 56.83 |
| HORVU2Hr1G094030.8 | Barley | nucleus, plastid | 75.47 | 55.56 |
| Zm00001d002572_P002 | Maize | cytosol, golgi, mitochondrion, nucleus | 94.97 | 46.6 |
| CDX73361 | Canola | extracellular | 24.53 | 42.39 |
| EES03856 | Sorghum | cytosol, nucleus, plastid | 33.33 | 31.36 |
| KXG22164 | Sorghum | cytosol, nucleus, plastid | 31.45 | 29.07 |
| KXG32249 | Sorghum | plastid | 33.33 | 28.8 |
| OQU80782 | Sorghum | nucleus, plastid | 32.7 | 27.66 |
Protein Annotations
| MapMan:19.2.2.2.3 | Gene3D:3.10.110.10 | EntrezGene:8060432 | UniProt:C5YEH5 | EnsemblPlants:EES12705 | ProteinID:EES12705 |
| ProteinID:EES12705.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0016925 | GO:GO:0019538 | GO:GO:0019789 | InterPro:IPR000608 | InterPro:IPR016135 |
| PFAM:PF00179 | PFscan:PS50127 | PANTHER:PTHR43927 | PANTHER:PTHR43927:SF2 | SMART:SM00212 | EnsemblPlantsGene:SORBI_3006G189200 |
| SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI0001A87766 | InterPro:Ubc9 | RefSeq:XP_002448377.1 |
Description
hypothetical protein
Coordinates
chr6:-:54365334..54368925
Molecular Weight (calculated)
17921.4 Da
IEP (calculated)
8.798
GRAVY (calculated)
-0.436
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYGGAARGR LAEERKAWRK RHPHGFVAKP ATLPDGSVNL MLWNCVVPGK EGTDWEGGYF PLTLHFTENY PSNPPTCKFP RRFFHVNVYD SGDVCLSILG
101: DAWAPSITVP QILIGIQELL DNPNPASPAQ DFAYDVFAKN MPEYKRRVRE QAKRYPSLV
101: DAWAPSITVP QILIGIQELL DNPNPASPAQ DFAYDVFAKN MPEYKRRVRE QAKRYPSLV
001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
Arabidopsis Description
SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.