Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, peroxisome, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035819.1-P | Field mustard | cytosol, plastid | 97.8 | 98.34 |
| CDY25375 | Canola | plastid | 97.8 | 97.8 |
| CDY42228 | Canola | plastid | 95.05 | 95.58 |
| CDY33445 | Canola | nucleus | 94.51 | 95.03 |
| CDY62105 | Canola | cytosol, plastid | 90.66 | 94.29 |
| AT3G20060.1 | Thale cress | plastid | 92.86 | 93.37 |
| CDY29588 | Canola | cytosol, plastid | 89.56 | 93.14 |
| CDY37132 | Canola | cytosol, plastid | 92.31 | 92.82 |
| CDY22799 | Canola | cytosol, plastid | 91.76 | 92.27 |
| CDY45063 | Canola | cytosol | 60.44 | 85.94 |
| VIT_06s0061g00070.t01 | Wine grape | cytosol | 80.22 | 82.49 |
| KRH24100 | Soybean | cytosol, plastid | 81.32 | 82.22 |
| PGSC0003DMT400080256 | Potato | cytosol, plastid | 78.02 | 79.78 |
| Solyc11g065190.1.1 | Tomato | plastid | 79.12 | 79.56 |
| GSMUA_Achr3P08740_001 | Banana | cytosol | 73.08 | 73.08 |
| GSMUA_Achr9P17810_001 | Banana | cytosol | 71.43 | 70.27 |
| TraesCS3A01G186500.1 | Wheat | cytosol, plastid | 69.23 | 67.74 |
| KRH29075 | Soybean | cytosol, golgi, peroxisome, plastid | 65.93 | 66.3 |
| Os01t0273100-01 | Rice | plastid | 69.23 | 65.97 |
| KXG32249 | Sorghum | plastid | 66.48 | 65.76 |
| Zm00001d008260_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 64.84 | 64.48 |
| CDY03608 | Canola | nucleus | 40.66 | 62.71 |
| OQU80782 | Sorghum | nucleus, plastid | 64.29 | 62.23 |
| HORVU3Hr1G038430.3 | Barley | nucleus, plastid | 63.19 | 60.85 |
| TraesCS3D01G190400.2 | Wheat | nucleus, plastid | 63.74 | 60.1 |
| TraesCS3B01G216000.2 | Wheat | plastid | 69.23 | 57.53 |
| Zm00001d008261_P003 | Maize | nucleus | 53.85 | 38.58 |
| CDX88967 | Canola | cytosol | 31.87 | 36.25 |
| CDX71988 | Canola | nucleus | 31.87 | 36.25 |
| CDY47661 | Canola | cytosol | 31.87 | 36.25 |
| CDX67711 | Canola | cytosol | 31.87 | 36.25 |
| CDY70581 | Canola | cytosol | 31.87 | 36.25 |
| CDX98253 | Canola | cytosol | 31.87 | 36.25 |
| CDY66302 | Canola | cytosol | 31.32 | 35.62 |
| CDX93982 | Canola | cytosol | 31.32 | 35.62 |
| CDY62383 | Canola | nucleus | 31.32 | 34.13 |
| CDY53695 | Canola | nucleus | 31.32 | 34.13 |
| CDX76101 | Canola | cytosol, nucleus, plastid | 31.32 | 34.13 |
| CDY02931 | Canola | cytosol, nucleus, plastid | 31.32 | 34.13 |
| CDY32651 | Canola | nucleus | 29.12 | 31.18 |
| CDY41239 | Canola | nucleus | 28.57 | 31.14 |
| CDY40214 | Canola | nucleus | 28.57 | 31.14 |
| CDY33025 | Canola | cytosol | 28.02 | 30.91 |
| CDY02882 | Canola | cytosol, mitochondrion, nucleus | 28.57 | 30.59 |
| CDX73361 | Canola | extracellular | 15.38 | 30.43 |
| CDX80292 | Canola | cytosol | 28.57 | 29.05 |
Protein Annotations
| MapMan:13.3.4.1.2 | Gene3D:3.10.110.10 | GO:A0A078GJ04 | UniProt:A0A078GJ04 | EnsemblPlants:CDY24563 | ProteinID:CDY24563 |
| ProteinID:CDY24563.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016740 | EnsemblPlantsGene:GSBRNA2T00026890001 | InterPro:IPR000608 | InterPro:IPR016135 | PFAM:PF00179 | ScanProsite:PS00183 |
| PFscan:PS50127 | PANTHER:PTHR44189 | MetaCyc:PWY-7511 | SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniPathway:UPA00143 | UniParc:UPI0004EEE6C5 | : | : |
Description
BnaC05g32470DBnaC05g32470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GJ04]
Coordinates
chrLK032161:+:35695..37334
Molecular Weight (calculated)
20133.9 Da
IEP (calculated)
4.769
GRAVY (calculated)
-0.392
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVNGYQGN TPAETTPAAA GSKQPAPPNK TVDSQSVLKR LLQSELMGLM MGGDPGISAF PEEDNIFCWK GTITGSKDTV FEGTDYRLSL SFSNDYPFKP
101: PKIKFETCCF HPNVDLYGNI CLDILQDKWS SAYDVRTILL SIQSLLGEPN ISSPLNNQAA QLWSNQEEYR KMVEKLYKPL NA
101: PKIKFETCCF HPNVDLYGNI CLDILQDKWS SAYDVRTILL SIQSLLGEPN ISSPLNNQAA QLWSNQEEYR KMVEKLYKPL NA
001: MATVNGYTGN TPAATTPAAT GSKQSAPPTK TVDSHSVLKR LQSELMGLMM GADPGISAFP EEDNIFCWKG TITGSKDTVF EGTEYRLSLT FSNDYPFKSP
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN A
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN A
Arabidopsis Description
UBC19UBC19 [Source:UniProtKB/TrEMBL;Acc:A0A178V7W3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.