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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • vacuole 1
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, vacuole
BaCelLo:nucleus
EpiLoc:vacuole
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra007157.1-P Field mustard nucleus 100.0 100.0
CDY41239 Canola nucleus 98.2 98.2
CDY62383 Canola nucleus 91.62 91.62
CDY53695 Canola nucleus 91.62 91.62
CDX76101 Canola cytosol, nucleus, plastid 90.42 90.42
CDY02931 Canola cytosol, nucleus, plastid 89.82 89.82
Solyc04g011430.2.1 Tomato cytosol 83.23 84.24
PGSC0003DMT400071311 Potato nucleus 82.63 83.64
PGSC0003DMT400060483 Potato cytosol, nucleus, plastid 85.03 83.53
PGSC0003DMT400060478 Potato cytosol, nucleus, plastid 83.83 83.33
Solyc05g054550.2.1 Tomato cytosol, nucleus, plastid 84.43 82.94
VIT_13s0019g00910.t01 Wine grape plastid 83.23 82.74
GSMUA_Achr6P34220_001 Banana plastid 82.63 82.14
Solyc05g054540.2.1 Tomato plastid 82.63 81.18
CDY32651 Canola nucleus 82.63 81.18
CDY02882 Canola cytosol, mitochondrion, nucleus 82.04 80.59
Os01t0839700-01 Rice cytosol, nucleus, plastid 81.44 80.47
Os05t0460200-01 Rice cytosol, nucleus, plastid 81.44 80.47
CDY33025 Canola cytosol 79.04 80.0
Zm00001d038376_P001 Maize extracellular 80.84 79.88
GSMUA_Achr11P... Banana cytosol, nucleus, plastid 80.24 79.76
Zm00001d012421_P003 Maize cytosol, nucleus, plastid 79.64 78.7
EES03856 Sorghum cytosol, nucleus, plastid 79.64 78.7
TraesCS3B01G390400.1 Wheat cytosol, nucleus, plastid 79.64 78.7
TraesCS1A01G285200.1 Wheat cytosol, nucleus, plastid 79.64 78.7
TraesCS1D01G284200.1 Wheat cytosol, nucleus, plastid 79.64 78.7
TraesCS3D01G351600.1 Wheat cytosol, nucleus, plastid 79.64 78.7
TraesCS3A01G357700.1 Wheat cytosol, nucleus, plastid 79.64 78.7
Zm00001d042929_P001 Maize cytosol, nucleus, plastid 79.04 78.11
HORVU1Hr1G072200.2 Barley cytosol 79.04 78.11
CDX80292 Canola cytosol 79.64 74.3
KXG22164 Sorghum cytosol, nucleus, plastid 73.05 70.93
GSMUA_Achr5P08370_001 Banana cytosol 57.48 70.59
TraesCS1B01G294400.2 Wheat plastid 79.64 66.5
Zm00001d010534_P001 Maize cytosol 79.64 56.12
GSMUA_Achr5P08330_001 Banana extracellular, golgi, vacuole 29.94 52.63
HORVU3Hr1G086540.2 Barley endoplasmic reticulum, golgi, plastid 79.64 52.57
Zm00001d040631_P001 Maize cytosol 57.48 42.29
CDY45063 Canola cytosol 28.14 36.72
CDX73361 Canola extracellular 19.76 35.87
CDX67711 Canola cytosol 29.34 30.62
CDY70581 Canola cytosol 29.34 30.62
CDX88967 Canola cytosol 29.34 30.62
CDX98253 Canola cytosol 29.34 30.62
CDY47661 Canola cytosol 28.74 30.0
CDY29588 Canola cytosol, plastid 31.14 29.71
CDY62105 Canola cytosol, plastid 31.14 29.71
CDX71988 Canola nucleus 28.14 29.38
CDY42228 Canola plastid 31.74 29.28
CDY22799 Canola cytosol, plastid 31.14 28.73
CDY33445 Canola nucleus 31.14 28.73
CDY37132 Canola cytosol, plastid 31.14 28.73
CDY25375 Canola plastid 31.14 28.57
CDY24563 Canola cytosol, nucleus, peroxisome, plastid 31.14 28.57
CDY66302 Canola cytosol 26.35 27.5
CDX93982 Canola cytosol 26.35 27.5
CDY03608 Canola nucleus 17.37 24.58
Zm00001d008383_P001 Maize plastid 25.75 18.7
Zm00001d009034_P002 Maize nucleus 42.52 18.35
Zm00001d029705_P032 Maize plasma membrane 31.14 9.56
Zm00001d005779_P153 Maize plasma membrane 21.56 6.0
Protein Annotations
MapMan:19.2.2.1.6.1.1MapMan:19.2.4.1.2Gene3D:3.10.110.10GO:A0A078HSE0UniProt:A0A078HSE0EnsemblPlants:CDY40214
ProteinID:CDY40214ProteinID:CDY40214.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005524GO:GO:0016740EnsemblPlantsGene:GSBRNA2T00069364001InterPro:IPR000608InterPro:IPR016135PFAM:PF00179
ScanProsite:PS00183PFscan:PS50127PANTHER:PTHR24067PANTHER:PTHR24067:SF174MetaCyc:PWY-7511SMART:SM00212
SUPFAM:SSF54495InterPro:UBQ-conjugat_E2InterPro:UBQ-conjugating_ASInterPro:UBQ-conjugating_enzyme/RWDUniPathway:UPA00143UniParc:UPI0001BA6C88
SEG:seg:::::
Description
BnaA09g34960DBnaA09g34960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSE0]
Coordinates
chrLK032466:+:109105..110675
Molecular Weight (calculated)
18873.4 Da
IEP (calculated)
4.999
GRAVY (calculated)
-0.444
Length
167 amino acids
Sequence
(BLAST)
001: MEKNQASLLL QQQLKHLCKN PVDGFSAGLV DESNVFQWSV SIMGPPDTLY EGGFFNAIMT FPEEYPNLPP TVRFTSEMWH PNVYSDGKVC ISILHPPGDD
101: PNGYELASER WNPVHTVETI MLSIISMLSS PNDESPANVE AAKEWRENRA GFRKKVSRCV RKSQEML
Best Arabidopsis Sequence Match ( AT3G55380.1 )
(BLAST)
001: MANNQASLLL QKQLKDLCKK PVDGFSAGLV DEKNVFQWSV SIMGPPDTLY EGGFFNAIMS FPENYPVSPP TVTFTSEMWH PNVYSDGKVC ISILHPPGDD
101: PHGYELASER WTPVHTVESI VLSIISMLSG PNDESPANVE AAKEWRDNRA EFRKKVSRCV RRSQEML
Arabidopsis Description
UBC14Ubiquitin-conjugating enzyme 14 [Source:UniProtKB/TrEMBL;Acc:F4IWU7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.