Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003301.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDX98253 | Canola | cytosol | 100.0 | 100.0 |
| CDX88967 | Canola | cytosol | 99.38 | 99.38 |
| CDY47661 | Canola | cytosol | 98.75 | 98.75 |
| CDX71988 | Canola | nucleus | 98.12 | 98.12 |
| CDY70581 | Canola | cytosol | 98.12 | 98.12 |
| AT3G57870.1 | Thale cress | cytosol | 95.0 | 95.0 |
| KRH77039 | Soybean | cytosol | 91.25 | 91.82 |
| KRH28435 | Soybean | cytosol | 91.25 | 91.82 |
| KRH57897 | Soybean | nucleus | 88.75 | 88.75 |
| KRH04554 | Soybean | nucleus | 88.75 | 88.75 |
| Solyc12g088680.1.1 | Tomato | cytosol | 85.0 | 85.0 |
| Solyc04g078620.2.1 | Tomato | nucleus | 85.0 | 85.0 |
| PGSC0003DMT400020524 | Potato | cytosol | 85.0 | 85.0 |
| PGSC0003DMT400039840 | Potato | mitochondrion | 82.5 | 82.5 |
| CDX93982 | Canola | cytosol | 81.88 | 81.88 |
| CDY66302 | Canola | cytosol | 81.25 | 81.25 |
| CDX73361 | Canola | extracellular | 29.38 | 51.09 |
| CDY45063 | Canola | cytosol | 32.5 | 40.62 |
| CDY62105 | Canola | cytosol, plastid | 37.5 | 34.29 |
| CDY29588 | Canola | cytosol, plastid | 37.5 | 34.29 |
| CDY62383 | Canola | nucleus | 34.38 | 32.93 |
| CDY53695 | Canola | nucleus | 34.38 | 32.93 |
| CDY22799 | Canola | cytosol, plastid | 36.88 | 32.6 |
| CDY37132 | Canola | cytosol, plastid | 36.88 | 32.6 |
| CDY02931 | Canola | cytosol, nucleus, plastid | 33.75 | 32.34 |
| CDX76101 | Canola | cytosol, nucleus, plastid | 33.75 | 32.34 |
| CDY42228 | Canola | plastid | 36.25 | 32.04 |
| CDY24563 | Canola | cytosol, nucleus, peroxisome, plastid | 36.25 | 31.87 |
| CDY25375 | Canola | plastid | 36.25 | 31.87 |
| CDY33445 | Canola | nucleus | 35.62 | 31.49 |
| CDY32651 | Canola | nucleus | 33.12 | 31.18 |
| CDY02882 | Canola | cytosol, mitochondrion, nucleus | 32.5 | 30.59 |
| CDY33025 | Canola | cytosol | 31.25 | 30.3 |
| CDY40214 | Canola | nucleus | 30.62 | 29.34 |
| CDY41239 | Canola | nucleus | 30.62 | 29.34 |
| CDX80292 | Canola | cytosol | 31.88 | 28.49 |
| CDY03608 | Canola | nucleus | 20.62 | 27.97 |
Protein Annotations
| MapMan:19.2.2.2.3 | Gene3D:3.10.110.10 | GO:A0A078EFW9 | EnsemblPlants:CDX67711 | ProteinID:CDX67711 | ProteinID:CDX67711.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0019789 | EnsemblPlantsGene:GSBRNA2T00098896001 | InterPro:IPR000608 | InterPro:IPR016135 |
| PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43927 | PANTHER:PTHR43927:SF4 | MetaCyc:PWY-7511 |
| SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniPathway:UPA00143 |
| UniParc:UPI0002541618 | InterPro:Ubc9 | SEG:seg | : | : | : |
Description
BnaA07g17510D
Coordinates
chrLK031787:-:1919186..1921062
Molecular Weight (calculated)
17844.3 Da
IEP (calculated)
8.477
GRAVY (calculated)
-0.481
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGPDGSVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPP GFFHPNVYPS GTVCLSILNE
101: DSGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFIQ DAVEYKKRVK LQSKQYPPIV
101: DSGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFIQ DAVEYKKRVK LQSKQYPPIV
001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
Arabidopsis Description
SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.