Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007157.1-P | Field mustard | nucleus | 98.2 | 98.2 |
| CDY40214 | Canola | nucleus | 98.2 | 98.2 |
| CDY62383 | Canola | nucleus | 91.62 | 91.62 |
| CDY53695 | Canola | nucleus | 91.62 | 91.62 |
| CDX76101 | Canola | cytosol, nucleus, plastid | 89.22 | 89.22 |
| CDY02931 | Canola | cytosol, nucleus, plastid | 88.62 | 88.62 |
| Solyc04g011430.2.1 | Tomato | cytosol | 82.63 | 83.64 |
| PGSC0003DMT400071311 | Potato | nucleus | 82.04 | 83.03 |
| PGSC0003DMT400060483 | Potato | cytosol, nucleus, plastid | 84.43 | 82.94 |
| PGSC0003DMT400060478 | Potato | cytosol, nucleus, plastid | 83.23 | 82.74 |
| Solyc05g054550.2.1 | Tomato | cytosol, nucleus, plastid | 83.83 | 82.35 |
| VIT_13s0019g00910.t01 | Wine grape | plastid | 82.63 | 82.14 |
| GSMUA_Achr6P34220_001 | Banana | plastid | 82.04 | 81.55 |
| CDY02882 | Canola | cytosol, mitochondrion, nucleus | 82.04 | 80.59 |
| Solyc05g054540.2.1 | Tomato | plastid | 82.04 | 80.59 |
| CDY32651 | Canola | nucleus | 82.04 | 80.59 |
| Os01t0839700-01 | Rice | cytosol, nucleus, plastid | 81.44 | 80.47 |
| Os05t0460200-01 | Rice | cytosol, nucleus, plastid | 81.44 | 80.47 |
| CDY33025 | Canola | cytosol | 79.04 | 80.0 |
| Zm00001d038376_P001 | Maize | extracellular | 80.84 | 79.88 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 79.64 | 79.17 |
| Zm00001d012421_P003 | Maize | cytosol, nucleus, plastid | 79.64 | 78.7 |
| EES03856 | Sorghum | cytosol, nucleus, plastid | 79.64 | 78.7 |
| TraesCS3B01G390400.1 | Wheat | cytosol, nucleus, plastid | 79.64 | 78.7 |
| TraesCS1A01G285200.1 | Wheat | cytosol, nucleus, plastid | 79.64 | 78.7 |
| TraesCS1D01G284200.1 | Wheat | cytosol, nucleus, plastid | 79.64 | 78.7 |
| TraesCS3D01G351600.1 | Wheat | cytosol, nucleus, plastid | 79.64 | 78.7 |
| TraesCS3A01G357700.1 | Wheat | cytosol, nucleus, plastid | 79.64 | 78.7 |
| Zm00001d042929_P001 | Maize | cytosol, nucleus, plastid | 79.04 | 78.11 |
| HORVU1Hr1G072200.2 | Barley | cytosol | 79.04 | 78.11 |
| CDX80292 | Canola | cytosol | 79.64 | 74.3 |
| KXG22164 | Sorghum | cytosol, nucleus, plastid | 73.05 | 70.93 |
| GSMUA_Achr5P08370_001 | Banana | cytosol | 57.48 | 70.59 |
| TraesCS1B01G294400.2 | Wheat | plastid | 79.64 | 66.5 |
| Zm00001d010534_P001 | Maize | cytosol | 79.64 | 56.12 |
| GSMUA_Achr5P08330_001 | Banana | extracellular, golgi, vacuole | 29.94 | 52.63 |
| HORVU3Hr1G086540.2 | Barley | endoplasmic reticulum, golgi, plastid | 79.64 | 52.57 |
| Zm00001d040631_P001 | Maize | cytosol | 57.48 | 42.29 |
| CDY45063 | Canola | cytosol | 28.14 | 36.72 |
| CDX73361 | Canola | extracellular | 19.76 | 35.87 |
| CDX67711 | Canola | cytosol | 29.34 | 30.62 |
| CDY70581 | Canola | cytosol | 29.34 | 30.62 |
| CDX88967 | Canola | cytosol | 29.34 | 30.62 |
| CDX98253 | Canola | cytosol | 29.34 | 30.62 |
| CDY47661 | Canola | cytosol | 28.74 | 30.0 |
| CDY29588 | Canola | cytosol, plastid | 31.14 | 29.71 |
| CDY62105 | Canola | cytosol, plastid | 31.14 | 29.71 |
| CDX71988 | Canola | nucleus | 28.14 | 29.38 |
| CDY42228 | Canola | plastid | 31.74 | 29.28 |
| CDY22799 | Canola | cytosol, plastid | 31.14 | 28.73 |
| CDY33445 | Canola | nucleus | 31.14 | 28.73 |
| CDY37132 | Canola | cytosol, plastid | 31.14 | 28.73 |
| CDY25375 | Canola | plastid | 31.14 | 28.57 |
| CDY24563 | Canola | cytosol, nucleus, peroxisome, plastid | 31.14 | 28.57 |
| CDY66302 | Canola | cytosol | 26.35 | 27.5 |
| CDX93982 | Canola | cytosol | 26.35 | 27.5 |
| CDY03608 | Canola | nucleus | 17.96 | 25.42 |
| Zm00001d008383_P001 | Maize | plastid | 25.75 | 18.7 |
| Zm00001d009034_P002 | Maize | nucleus | 41.92 | 18.09 |
| Zm00001d029705_P032 | Maize | plasma membrane | 29.94 | 9.19 |
| Zm00001d005779_P153 | Maize | plasma membrane | 21.56 | 6.0 |
Protein Annotations
| MapMan:19.2.2.1.6.1.1 | MapMan:19.2.4.1.2 | Gene3D:3.10.110.10 | GO:A0A078HV60 | UniProt:A0A078HV60 | EnsemblPlants:CDY41239 |
| ProteinID:CDY41239 | ProteinID:CDY41239.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016740 | EnsemblPlantsGene:GSBRNA2T00072661001 | InterPro:IPR000608 | InterPro:IPR016135 | PFAM:PF00179 |
| ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR24067 | PANTHER:PTHR24067:SF174 | MetaCyc:PWY-7511 | SMART:SM00212 |
| SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniPathway:UPA00143 | UniParc:UPI0001BA9012 |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g26190DBnaC08g26190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HV60]
Coordinates
chrLK032493:-:290222..291859
Molecular Weight (calculated)
18899.5 Da
IEP (calculated)
5.592
GRAVY (calculated)
-0.437
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKNQASLLL QQQLKHLCKN PVDGFSAGLV DESNVFQWSV SIMGPPDTLY EGGFFNAIMT FPEQYPNLPP TVRFTSEMWH PNVYSDGKVC ISILHHPGDD
101: PNGYELASER WTPVHTVETI MLSIISMLSS PNDESPANVE AAKEWRENRA GFRKKVSRCV RKSQEML
101: PNGYELASER WTPVHTVETI MLSIISMLSS PNDESPANVE AAKEWRENRA GFRKKVSRCV RKSQEML
001: MNSQACLLLQ KQLKDLCKHP VDGFSAGLVD EKNIFEWSVT IIGPPDTLYE GGFFYAIMSF PQNYPNSPPT VRFTSDIWHP NVYPDGRVCI SILHPPGDDP
101: SGYELASERW TPVHTVESIM LSIISMLSGP NDESPANVEA AKEWREKRDE FKKKVSRCVR KSQEMF
101: SGYELASERW TPVHTVESIM LSIISMLSGP NDESPANVEA AKEWREKRDE FKKKVSRCVR KSQEMF
Arabidopsis Description
UBC13UBC13 [Source:UniProtKB/TrEMBL;Acc:A0A178V960]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.