Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G284200.1 | Wheat | cytosol, nucleus, plastid | 84.5 | 100.0 |
| TraesCS1A01G285200.1 | Wheat | cytosol, nucleus, plastid | 84.5 | 100.0 |
| HORVU1Hr1G072200.2 | Barley | cytosol | 82.5 | 97.63 |
| Zm00001d038376_P001 | Maize | extracellular | 78.0 | 92.31 |
| TraesCS3B01G390400.1 | Wheat | cytosol, nucleus, plastid | 78.0 | 92.31 |
| Os05t0460200-01 | Rice | cytosol, nucleus, plastid | 78.0 | 92.31 |
| GSMUA_Achr6P34220_001 | Banana | plastid | 74.0 | 88.1 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 73.0 | 86.9 |
| VIT_08s0007g00120.t01 | Wine grape | mitochondrion | 72.5 | 86.31 |
| KRH23052 | Soybean | nucleus | 71.0 | 85.54 |
| KRH10280 | Soybean | nucleus | 71.0 | 85.54 |
| VIT_13s0019g00910.t01 | Wine grape | plastid | 71.5 | 85.12 |
| KRH24817 | Soybean | cytosol, nucleus, plastid | 70.5 | 84.43 |
| KRH29815 | Soybean | cytosol | 70.0 | 84.34 |
| AT5G59300.1 | Thale cress | nucleus | 69.5 | 83.73 |
| CDY53695 | Canola | nucleus | 69.0 | 82.63 |
| CDY62383 | Canola | nucleus | 69.0 | 82.63 |
| Bra003210.1-P | Field mustard | nucleus | 69.0 | 82.63 |
| PGSC0003DMT400060478 | Potato | cytosol, nucleus, plastid | 69.0 | 82.14 |
| AT3G46460.1 | Thale cress | cytosol | 68.0 | 81.93 |
| CDY02882 | Canola | cytosol, mitochondrion, nucleus | 69.5 | 81.76 |
| CDY32651 | Canola | nucleus | 69.5 | 81.76 |
| Bra020324.1-P | Field mustard | nucleus | 69.5 | 81.76 |
| Solyc05g054550.2.1 | Tomato | cytosol, nucleus, plastid | 69.5 | 81.76 |
| VIT_06s0004g04430.t01 | Wine grape | cytosol, nucleus, plastid | 69.0 | 81.18 |
| PGSC0003DMT400060483 | Potato | cytosol, nucleus, plastid | 69.0 | 81.18 |
| CDY02931 | Canola | cytosol, nucleus, plastid | 67.5 | 80.84 |
| CDX76101 | Canola | cytosol, nucleus, plastid | 67.5 | 80.84 |
| KXG22164 | Sorghum | cytosol, nucleus, plastid | 69.5 | 80.81 |
| Bra002579.1-P | Field mustard | cytosol | 64.0 | 80.5 |
| Bra014751.1-P | Field mustard | cytosol, nucleus, plastid | 67.0 | 80.24 |
| Solyc04g011430.2.1 | Tomato | cytosol | 66.0 | 80.0 |
| CDY40214 | Canola | nucleus | 66.5 | 79.64 |
| Bra007157.1-P | Field mustard | nucleus | 66.5 | 79.64 |
| Solyc09g009720.1.1 | Tomato | nucleus | 66.5 | 79.64 |
| PGSC0003DMT400023134 | Potato | nucleus | 66.5 | 79.64 |
| CDY41239 | Canola | nucleus | 66.5 | 79.64 |
| GSMUA_Achr5P08370_001 | Banana | cytosol | 54.0 | 79.41 |
| PGSC0003DMT400071311 | Potato | nucleus | 65.5 | 79.39 |
| CDY33025 | Canola | cytosol | 65.5 | 79.39 |
| Solyc05g054540.2.1 | Tomato | plastid | 67.0 | 78.82 |
| CDX80292 | Canola | cytosol | 65.0 | 72.63 |
| Zm00001d010534_P001 | Maize | cytosol | 77.5 | 65.4 |
| AT3G55380.2 | Thale cress | nucleus | 65.5 | 65.17 |
| TraesCS4B01G346600.2 | Wheat | cytosol | 28.0 | 34.78 |
| TraesCS2B01G413400.1 | Wheat | peroxisome | 27.0 | 33.96 |
| TraesCS1B01G214400.2 | Wheat | nucleus | 26.0 | 30.95 |
| TraesCS3B01G216000.2 | Wheat | plastid | 29.0 | 26.48 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G294400.2 | EnsemblPlantsGene:TraesCS1B01G294400 | Gene3D:3.10.110.10 | InterPro:IPR000608 | InterPro:IPR016135 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | ncoils:Coil | PANTHER:PTHR24067 | PANTHER:PTHR24067:SF237 | PFAM:PF00179 |
| PFscan:PS50127 | ScanProsite:PS00183 | SEG:seg | SMART:SM00212 | SUPFAM:SSF54495 | TIGR:cd00195 |
| MapMan:19.2.2.1.6.1.1 | MapMan:19.2.4.1.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:512419486..512422106
Molecular Weight (calculated)
21994.0 Da
IEP (calculated)
4.719
GRAVY (calculated)
-0.430
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPPSQASL LLQKQLRGMD PPPLSPSSPP DSSRSRADPC PGVPCFVADL AKNPVDGFSA GLVDDGNVFE WQVTIIGPPE TLYDGGYFNA VMTFPQDYPN
101: SPPSVRFTSE MWHPNVYPDG RVCISILHPP GDDPNGYELA SERWTPVHTV ESIVLSIISM LSSPNDESPA NIEAAKDWRE KRAEFKKKVR SLVRKSQEML
101: SPPSVRFTSE MWHPNVYPDG RVCISILHPP GDDPNGYELA SERWTPVHTV ESIVLSIISM LSSPNDESPA NIEAAKDWRE KRAEFKKKVR SLVRKSQEML
001: MNSQACLLLQ KQLKDLCKHP VDGFSAGLVD EKNIFEWSVT IIGPPDTLYE GGFFYAIMSF PQNYPNSPPT VRFTSDIWHP NVYPDGRVCI SILHPPGDDP
101: SGYELASERW TPVHTVESIM LSIISMLSGP NDESPANVEA AKEWREKRDE FKKKVSRCVR KSQEMF
101: SGYELASERW TPVHTVESIM LSIISMLSGP NDESPANVEA AKEWREKRDE FKKKVSRCVR KSQEMF
Arabidopsis Description
UBC13UBC13 [Source:UniProtKB/TrEMBL;Acc:A0A178V960]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.