Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 2
- plastid 2
- cytosol 1
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH23052 | Soybean | nucleus | 91.76 | 93.98 |
| KRH10280 | Soybean | nucleus | 91.76 | 93.98 |
| KRH29815 | Soybean | cytosol | 91.18 | 93.37 |
| KRH24817 | Soybean | cytosol, nucleus, plastid | 90.59 | 92.22 |
| VIT_13s0019g00910.t01 | Wine grape | plastid | 89.41 | 90.48 |
| GSMUA_Achr6P34220_001 | Banana | plastid | 89.41 | 90.48 |
| VIT_08s0007g00120.t01 | Wine grape | mitochondrion | 88.82 | 89.88 |
| AT5G59300.1 | Thale cress | nucleus | 87.06 | 89.16 |
| AT3G46460.1 | Thale cress | cytosol | 85.88 | 87.95 |
| Zm00001d038376_P001 | Maize | extracellular | 87.06 | 87.57 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 85.88 | 86.9 |
| Zm00001d012421_P003 | Maize | cytosol, nucleus, plastid | 85.88 | 86.39 |
| EES03856 | Sorghum | cytosol, nucleus, plastid | 85.88 | 86.39 |
| Os05t0460200-01 | Rice | cytosol, nucleus, plastid | 85.88 | 86.39 |
| Os01t0839700-01 | Rice | cytosol, nucleus, plastid | 85.29 | 85.8 |
| TraesCS3A01G357700.1 | Wheat | cytosol, nucleus, plastid | 84.71 | 85.21 |
| TraesCS3B01G390400.1 | Wheat | cytosol, nucleus, plastid | 84.71 | 85.21 |
| TraesCS3D01G351600.1 | Wheat | cytosol, nucleus, plastid | 84.71 | 85.21 |
| Bra002579.1-P | Field mustard | cytosol | 78.24 | 83.65 |
| Zm00001d042929_P001 | Maize | cytosol, nucleus, plastid | 82.94 | 83.43 |
| Bra020324.1-P | Field mustard | nucleus | 82.94 | 82.94 |
| CDY32651 | Canola | nucleus | 82.94 | 82.94 |
| CDY02882 | Canola | cytosol, mitochondrion, nucleus | 81.76 | 81.76 |
| TraesCS1A01G285200.1 | Wheat | cytosol, nucleus, plastid | 81.18 | 81.66 |
| TraesCS1D01G284200.1 | Wheat | cytosol, nucleus, plastid | 81.18 | 81.66 |
| CDY33025 | Canola | cytosol | 78.82 | 81.21 |
| HORVU1Hr1G072200.2 | Barley | cytosol | 80.59 | 81.07 |
| Solyc09g009720.1.1 | Tomato | nucleus | 79.41 | 80.84 |
| PGSC0003DMT400023134 | Potato | nucleus | 79.41 | 80.84 |
| KXG22164 | Sorghum | cytosol, nucleus, plastid | 79.41 | 78.49 |
| GSMUA_Achr5P08370_001 | Banana | cytosol | 60.59 | 75.74 |
| CDX80292 | Canola | cytosol | 78.82 | 74.86 |
| TraesCS1B01G294400.2 | Wheat | plastid | 81.18 | 69.0 |
| Zm00001d010534_P001 | Maize | cytosol | 85.29 | 61.18 |
| GSMUA_Achr5P08330_001 | Banana | extracellular, golgi, vacuole | 32.35 | 57.89 |
| HORVU3Hr1G086540.2 | Barley | endoplasmic reticulum, golgi, plastid | 84.71 | 56.92 |
| Zm00001d040631_P001 | Maize | cytosol | 58.24 | 43.61 |
| VIT_07s0031g00160.t01 | Wine grape | nucleus | 30.0 | 31.48 |
| VIT_06s0061g00070.t01 | Wine grape | cytosol | 32.35 | 31.07 |
| VIT_13s0019g04090.t01 | Wine grape | cytosol | 31.76 | 28.42 |
| VIT_18s0001g10100.t01 | Wine grape | nucleus | 27.65 | 24.1 |
| Zm00001d009034_P002 | Maize | nucleus | 45.29 | 19.9 |
| Zm00001d008383_P001 | Maize | plastid | 25.29 | 18.7 |
| Zm00001d029705_P032 | Maize | plasma membrane | 30.59 | 9.56 |
| Zm00001d005779_P153 | Maize | plasma membrane | 20.59 | 5.83 |
Protein Annotations
| EntrezGene:100255351 | wikigene:100255351 | MapMan:19.2.2.1.6.1.1 | MapMan:19.2.4.1.2 | Gene3D:3.10.110.10 | ProteinID:CCB43588 |
| ProteinID:CCB43588.1 | UniProt:F6GV29 | EMBL:FN594951 | GO:GO:0000166 | GO:GO:0000209 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031625 | GO:GO:0061630 |
| InterPro:IPR000608 | InterPro:IPR016135 | EntrezGene:LOC100255351 | wikigene:LOC100255351 | PFAM:PF00179 | ScanProsite:PS00183 |
| PFscan:PS50127 | PANTHER:PTHR24067 | PANTHER:PTHR24067:SF237 | SMART:SM00212 | SUPFAM:SSF54495 | TIGR:TC70772 |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI00015C76F5 | ArrayExpress:VIT_06s0004g04430 | EnsemblPlantsGene:VIT_06s0004g04430 |
| EnsemblPlants:VIT_06s0004g04430.t01 | unigene:Vvi.12003 | RefSeq:XP_002284116 | RefSeq:XP_002284116.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr6:-:5387285..5399913
Molecular Weight (calculated)
19090.6 Da
IEP (calculated)
4.818
GRAVY (calculated)
-0.392
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MASASTNQAS LLLQKQLKDL CKNPVDGFSA GLVDESNIFE WSVTIIGPPD TLYDGGFFNA IMSFPPNYPN SPPTVKFTSE VWHPNVYPDG RVCISILHPP
101: GEDPNGYELA SERWMPIHTV ESIVLSIISM LSSPNDESPA NIEAAKEWRD RRDEFKKKVS RCVRRSQEMF
101: GEDPNGYELA SERWMPIHTV ESIVLSIISM LSSPNDESPA NIEAAKEWRD RRDEFKKKVS RCVRRSQEMF
001: MASQASLLLQ KQLKDLCKHP VDGFSAGLVD EKNIFEWSVT IIGPPDTLYE GGFFNAIMTF PQNYPNSPPT VRFTSDMWHP NVYSDGRVCI SILHPPGDDP
101: SGYELASERW TPVHTVESIM LSIISMLSGP NDESPANVEA AKEWRDKRDE FKKKVSRCVR KSQEMF
101: SGYELASERW TPVHTVESIM LSIISMLSGP NDESPANVEA AKEWRDKRDE FKKKVSRCVR KSQEMF
Arabidopsis Description
UBC7Ubiquitin-conjugating enzyme E2 7 [Source:UniProtKB/Swiss-Prot;Acc:Q42540]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.