Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G59300.1 | Thale cress | nucleus | 95.78 | 95.78 |
| Bra002579.1-P | Field mustard | cytosol | 89.16 | 93.08 |
| KRH23052 | Soybean | nucleus | 90.36 | 90.36 |
| KRH10280 | Soybean | nucleus | 90.36 | 90.36 |
| CDY33025 | Canola | cytosol | 89.76 | 90.3 |
| KRH29815 | Soybean | cytosol | 89.76 | 89.76 |
| KRH24817 | Soybean | cytosol, nucleus, plastid | 89.16 | 88.62 |
| Os01t0839700-01 | Rice | cytosol, nucleus, plastid | 87.95 | 86.39 |
| VIT_06s0004g04430.t01 | Wine grape | cytosol, nucleus, plastid | 87.95 | 85.88 |
| Zm00001d038376_P001 | Maize | extracellular | 86.14 | 84.62 |
| GSMUA_Achr6P34220_001 | Banana | plastid | 85.54 | 84.52 |
| TraesCS3B01G390400.1 | Wheat | cytosol, nucleus, plastid | 85.54 | 84.02 |
| TraesCS3A01G357700.1 | Wheat | cytosol, nucleus, plastid | 85.54 | 84.02 |
| TraesCS3D01G351600.1 | Wheat | cytosol, nucleus, plastid | 85.54 | 84.02 |
| EES03856 | Sorghum | cytosol, nucleus, plastid | 85.54 | 84.02 |
| Zm00001d012421_P003 | Maize | cytosol, nucleus, plastid | 84.94 | 83.43 |
| CDX80292 | Canola | cytosol | 89.76 | 83.24 |
| Os05t0460200-01 | Rice | cytosol, nucleus, plastid | 84.34 | 82.84 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 83.13 | 82.14 |
| PGSC0003DMT400023134 | Potato | nucleus | 81.33 | 80.84 |
| Solyc09g009720.1.1 | Tomato | nucleus | 81.33 | 80.84 |
| Zm00001d042929_P001 | Maize | cytosol, nucleus, plastid | 81.93 | 80.47 |
| TraesCS1D01G284200.1 | Wheat | cytosol, nucleus, plastid | 81.93 | 80.47 |
| TraesCS1A01G285200.1 | Wheat | cytosol, nucleus, plastid | 81.93 | 80.47 |
| HORVU1Hr1G072200.2 | Barley | cytosol | 81.33 | 79.88 |
| KXG22164 | Sorghum | cytosol, nucleus, plastid | 75.3 | 72.67 |
| GSMUA_Achr5P08370_001 | Banana | cytosol | 59.04 | 72.06 |
| AT3G55380.2 | Thale cress | nucleus | 84.34 | 69.65 |
| TraesCS1B01G294400.2 | Wheat | plastid | 81.93 | 68.0 |
| Zm00001d010534_P001 | Maize | cytosol | 84.94 | 59.49 |
| GSMUA_Achr5P08330_001 | Banana | extracellular, golgi, vacuole | 33.73 | 58.95 |
| HORVU3Hr1G086540.2 | Barley | endoplasmic reticulum, golgi, plastid | 85.54 | 56.13 |
| Zm00001d040631_P001 | Maize | cytosol | 59.04 | 43.17 |
| AT3G57870.1 | Thale cress | cytosol | 31.93 | 33.12 |
| AT1G50490.1 | Thale cress | plastid | 32.53 | 30.0 |
| AT3G20060.1 | Thale cress | plastid | 31.93 | 29.28 |
| Zm00001d008383_P001 | Maize | plastid | 26.51 | 19.13 |
| Zm00001d009034_P002 | Maize | nucleus | 42.77 | 18.35 |
| Zm00001d029705_P032 | Maize | plasma membrane | 28.31 | 8.64 |
| Zm00001d005779_P153 | Maize | plasma membrane | 20.48 | 5.67 |
Protein Annotations
| MapMan:19.2.2.1.6.1.1 | MapMan:19.2.4.1.2 | Gene3D:3.10.110.10 | EntrezGene:823796 | UniProt:A0A178V960 | ProteinID:AAC49322.1 |
| ProteinID:AEE78162.1 | ArrayExpress:AT3G46460 | EnsemblPlantsGene:AT3G46460 | RefSeq:AT3G46460 | TAIR:AT3G46460 | RefSeq:AT3G46460-TAIR-G |
| EnsemblPlants:AT3G46460.1 | TAIR:AT3G46460.1 | EMBL:AY050368 | EMBL:AY094040 | ProteinID:CAB62037.1 | EMBL:DQ027027 |
| GO:GO:0000166 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006464 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031625 | GO:GO:0061630 | InterPro:IPR000608 |
| InterPro:IPR016135 | RefSeq:NP_566884.1 | ProteinID:OAP02324.1 | PFAM:PF00179 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00183 | PFscan:PS50127 |
| PANTHER:PTHR24067 | PANTHER:PTHR24067:SF237 | UniProt:Q42541 | SMART:SM00212 | SUPFAM:SSF54495 | Symbol:UBC13 |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI00000AC8A8 | SEG:seg | : |
Description
UBC13UBC13 [Source:UniProtKB/TrEMBL;Acc:A0A178V960]
Coordinates
chr3:-:17095706..17097465
Molecular Weight (calculated)
18823.4 Da
IEP (calculated)
5.259
GRAVY (calculated)
-0.419
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSQACLLLQ KQLKDLCKHP VDGFSAGLVD EKNIFEWSVT IIGPPDTLYE GGFFYAIMSF PQNYPNSPPT VRFTSDIWHP NVYPDGRVCI SILHPPGDDP
101: SGYELASERW TPVHTVESIM LSIISMLSGP NDESPANVEA AKEWREKRDE FKKKVSRCVR KSQEMF
101: SGYELASERW TPVHTVESIM LSIISMLSGP NDESPANVEA AKEWREKRDE FKKKVSRCVR KSQEMF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.