Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030487.1-P | Field mustard | cytosol, plastid | 92.22 | 95.4 |
| CDY37132 | Canola | cytosol, plastid | 95.56 | 95.03 |
| Bra018852.1-P | Field mustard | cytosol, plastid | 95.56 | 95.03 |
| CDY62105 | Canola | cytosol, plastid | 92.22 | 94.86 |
| CDY29588 | Canola | cytosol, plastid | 92.22 | 94.86 |
| CDY22799 | Canola | cytosol, plastid | 95.0 | 94.48 |
| AT3G20060.1 | Thale cress | plastid | 90.56 | 90.06 |
| CDY45063 | Canola | cytosol | 62.78 | 88.28 |
| VIT_06s0061g00070.t01 | Wine grape | cytosol | 81.67 | 83.05 |
| KRH24100 | Soybean | cytosol, plastid | 82.22 | 82.22 |
| PGSC0003DMT400080256 | Potato | cytosol, plastid | 80.56 | 81.46 |
| Solyc11g065190.1.1 | Tomato | plastid | 81.67 | 81.22 |
| GSMUA_Achr3P08740_001 | Banana | cytosol | 75.0 | 74.18 |
| GSMUA_Achr9P17810_001 | Banana | cytosol | 72.78 | 70.81 |
| Bra014255.1-P | Field mustard | cytosol | 64.44 | 70.73 |
| TraesCS3A01G186500.1 | Wheat | cytosol, plastid | 70.56 | 68.28 |
| KRH29075 | Soybean | cytosol, golgi, peroxisome, plastid | 67.78 | 67.4 |
| KXG32249 | Sorghum | plastid | 68.33 | 66.85 |
| Zm00001d008260_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 66.67 | 65.57 |
| Os01t0273100-01 | Rice | plastid | 69.44 | 65.44 |
| CDY03608 | Canola | nucleus | 41.67 | 63.56 |
| OQU80782 | Sorghum | nucleus, plastid | 65.56 | 62.77 |
| HORVU3Hr1G038430.3 | Barley | nucleus, plastid | 64.44 | 61.38 |
| TraesCS3D01G190400.2 | Wheat | nucleus, plastid | 65.0 | 60.62 |
| TraesCS3B01G216000.2 | Wheat | plastid | 70.56 | 57.99 |
| Zm00001d008261_P003 | Maize | nucleus | 55.0 | 38.98 |
| AT3G57870.1 | Thale cress | cytosol | 32.22 | 36.25 |
| AT5G59300.1 | Thale cress | nucleus | 30.0 | 32.53 |
| AT3G46460.1 | Thale cress | cytosol | 30.0 | 32.53 |
| AT3G55380.2 | Thale cress | nucleus | 29.44 | 26.37 |
Protein Annotations
| MapMan:13.3.4.1.2 | Gene3D:3.10.110.10 | EntrezGene:841471 | ProteinID:AAF87880.1 | ProteinID:AAG51188.1 | ProteinID:AEE32556.1 |
| EMBL:AK227382 | ArrayExpress:AT1G50490 | EnsemblPlantsGene:AT1G50490 | RefSeq:AT1G50490 | TAIR:AT1G50490 | RefSeq:AT1G50490-TAIR-G |
| EnsemblPlants:AT1G50490.1 | TAIR:AT1G50490.1 | EMBL:AY088923 | EMBL:AY127574 | EMBL:BT005855 | EMBL:DQ027034 |
| GO:GO:0000166 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008283 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0030071 | GO:GO:0031145 | GO:GO:0031625 | GO:GO:0061630 | InterPro:IPR000608 | InterPro:IPR016135 |
| RefSeq:NP_564572.1 | PFAM:PF00179 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR44189 |
| UniProt:Q8L7T3 | SMART:SM00212 | SUPFAM:SSF54495 | Symbol:UBC20 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS |
| InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI0000060D70 | SEG:seg | : | : | : |
Description
UBC20Ubiquitin-conjugating enzyme E2 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7T3]
Coordinates
chr1:-:18704805..18706657
Molecular Weight (calculated)
19793.4 Da
IEP (calculated)
4.947
GRAVY (calculated)
-0.409
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVNGYQGN TPADPPASNG SKQPAAPTKT VDSQSVLKRL QSELMGLMMG GGPGISAFPE EDNIFCWKGT ITGSKDTVFE GTEYRLSLSF SNDYPFKPPK
101: VKFETCCFHP NVDVYGNICL DILQDKWSSA YDVRTILLSI QSLLGEPNIS SPLNTQAAQL WSNQEEYRKM VEKLYKPPSA
101: VKFETCCFHP NVDVYGNICL DILQDKWSSA YDVRTILLSI QSLLGEPNIS SPLNTQAAQL WSNQEEYRKM VEKLYKPPSA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.